Browse Element(s) Details


Os.11940.1.S1_at

Description gb:AK120795.1
DB_XREF= gi:37990418
TID=Os.11940.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11940 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023012D11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023012D11, full insert sequence.
FL= gb:AK120795.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4731011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g47250Os.8021.1.S1_x_at10/114+27842337..27844542Cytochrome P450 86A2, putative, expressed
LOC_Os04g47260OsAffx.14310.1.S1_s_at11/114+27845921..27847884expressed protein
LOC_Os04g47270Os.53652.1.S1_at10/114+27848037..27851280amine oxidase family protein, putative, expressed
LOC_Os04g47280Os.419.2.S1_at11/114+27852512..27855504glycosyl hydrolase family 29, putative, expressed
LOC_Os04g47290OsAffx.4110.1.S1_at11/114+27856467..27860700expressed protein
LOC_Os04g47300OsAffx.14311.1.S1_s_at11/114+27860417..27863201Calcium-dependent protein kinase, putative, expressed
LOC_Os04g47310Os.11940.1.S1_at11/114+27865144..27866751expressed protein
LOC_Os04g47320OsAffx.26499.1.S1_at11/114+27872062..27875526Mechanosensitive ion channel family protein, expressed
LOC_Os04g47330Os.55318.1.S1_at11/114+27877256..27878536Rho-GTPase-activating protein, putative, expressed
LOC_Os04g47350NANA4+27886625..27888644retrotransposon protein, putative, unclassified
LOC_Os04g47360Os.52261.1.S1_at11/114+27889666..27894512Prolyl endopeptidase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11940.1.S1_at--542--1351Chr04:27865708..27865732 (25 bp)
AGAGAGACATCACCACGAACGGCGC
LOC_Os04g47310
Os.11940.1.S1_at--129--4791Chr04:27865734..27865758 (25 bp)
GCTGCCACCAAGAGCACTGAGGGAA
LOC_Os04g47310
Os.11940.1.S1_at--863--1491Chr04:27866279..27866303 (25 bp)
AGCACTTATGCTTATCTGAATGAAC
LOC_Os04g47310
Os.11940.1.S1_at--1145--2071Chr04:27866312..27866336 (25 bp)
ACATCCACGGATGAGAACGGCAGAA
LOC_Os04g47310
Os.11940.1.S1_at--981--4431Chr04:27866345..27866369 (25 bp)
GCCATCAAATACATCCCACAGGAGA
LOC_Os04g47310
Os.11940.1.S1_at--634--671Chr04:27866375..27866399 (25 bp)
ATGAACTTCTTCTCATCGATTCCAA
LOC_Os04g47310
Os.11940.1.S1_at--1131--5151Chr04:27866423..27866447 (25 bp)
GCAATCTTCTAAATGGGCAAGCCAA
LOC_Os04g47310
Os.11940.1.S1_at--350--171Chr04:27866583..27866607 (25 bp)
ATTTTGTAACCTTGTTGCCTTGCGT
LOC_Os04g47310
Os.11940.1.S1_at--825--10171Chr04:27866680..27866704 (25 bp)
TATATCAGAAGCTATTGCCAACACT
LOC_Os04g47310
Os.11940.1.S1_at--1032--4391Chr04:27866696..27866720 (25 bp)
GCCAACACTTCTGTGATGGTATCAC
LOC_Os04g47310
Os.11940.1.S1_at--955--6791Chr04:27866725..27866749 (25 bp)
GTTATTCGGCATTATACTGTTCAGC
LOC_Os04g47310
Target Sequence 
AGAGAGACATCACCACGAACGGCGCCGCTGCCACCAAGAGCACTGAGGGAAGGATTGGCATCAAAGATTGGTGGAGAAAA
AGCACTTATGCTTATCTGAATGAACCAGCNAATGACATCCACGGATGAGAACGGCAGAAGGAAGCACGCCATCAAATACA
TCCCACAGGAGAGATGCATGAACTTCTTCTCATCGATTCCAAGTCAACATAATACTACTACTTTTGCAATCTTCTAAATG
GGCAAGCCAATGATAAGCTGAGGCATATTGGCAAATTAGAAAATATGCAAGTGGTATATGCATCAGCAATGCTATGGGTG
GAATAAACTACATTGTTTTTAAGTGTATAAGTATGTCCAAACTGAATGGTACTTTAAAGTTAATCATTTTGTAACCTTGT
TGCCTTGCGTGGTATAGAAAGCAGGCCATTTTAACTTATTATTCATTGTAAAAAAANCAATTTTAGTTGGTGCTTGNNAT
GATATATCAGAAGCTATTGCCAACACTTCTGTGATGGTATCACGAATGTTATTCGGCATTATACTGTTCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11940.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis