Browse Element(s) Details


Os.11948.1.S1_at

Description gb:AK068016.1
DB_XREF= gi:32978034
TID=Os.11948.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11948 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013130O22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013131N20, full insert sequence.
FL= gb:AK068109.1 gb:AK068016.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3907011/11Got1-like family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g39030OsAffx.24641.1.S1_at11/112+23567096..23569639expressed protein
LOC_Os02g39030Os.21789.2.S1_x_at10/112+23567096..23569639expressed protein
LOC_Os02g39040Os.35065.1.S1_at11/112+23570045..23572405mitochondrial transcription termination factor, putative, expressed
LOC_Os02g39050Os.51940.1.S1_x_at11/112+23572529..23574954Isy1-like splicing family protein, expressed
LOC_Os02g39060OsAffx.2912.1.S1_s_at11/112+23576093..23577953RNA recognition motif family protein, expressed
LOC_Os02g39060OsAffx.2912.1.S1_at11/112+23576093..23577953RNA recognition motif family protein, expressed
LOC_Os02g39070Os.11948.1.S1_at11/112+23591972..23595749Got1-like family protein, expressed
LOC_Os02g39070OsAffx.12403.1.S1_s_at11/112+23591972..23595749Got1-like family protein, expressed
LOC_Os02g39080Os.27442.1.A1_at6/112+23600664..23601421expressed protein
LOC_Os02g39090NANA2+23603431..23604774Protein kinase domain containing protein, expressed
LOC_Os02g39100OsAffx.24643.1.S1_s_at11/112+23606150..23608548Leucine Rich Repeat family protein, expressed
LOC_Os02g39110NANA2+23611877..23618032retrotransposon protein, putative, unclassified
LOC_Os02g39120Os.28943.1.S1_x_at1/112+23618665..23621930transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016192biological_processvesicle-mediated transport
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11948.1.S1_at--12--8611Chr02:23594992..23595016 (25 bp)
TGGTCTGTTTCTTCTCTTTGTCCGA
LOC_Os02g39070
Os.11948.1.S1_at--941--4231Chr02:23595013..23595037 (25 bp)
CCGATGGCCTGTTGCTGGCATAATA
LOC_Os02g39070
Os.11948.1.S1_at--670--10791Chr02:23595057..23595175 (25 bp)
TTGTTCTCTTCAGTGGTTATGGACC
LOC_Os02g39070
Os.11948.1.S1_at--761--7311Chr02:23595437..23595461 (25 bp)
GTGCATGACAACTCACGGCAGAAAT
LOC_Os02g39070
Os.11948.1.S1_at--458--5571Chr02:23595457..23595481 (25 bp)
GAAATTACCCTTCGTACGGGAGCAT
LOC_Os02g39070
Os.11948.1.S1_at--228--5551Chr02:23595501..23595525 (25 bp)
GAAACCTGCTGTGTACCATCTGCCA
LOC_Os02g39070
Os.11948.1.S1_at--1034--6971Chr02:23595513..23595537 (25 bp)
GTACCATCTGCCACGATGCAGTTTA
LOC_Os02g39070
Os.11948.1.S1_at--359--7471Chr02:23595544..23595568 (25 bp)
GTGTGCATATTCATACTTTCGCCTT
LOC_Os02g39070
Os.11948.1.S1_at--64--10651Chr02:23595561..23595585 (25 bp)
TTCGCCTTTCTAATCTGGAGTTTAT
LOC_Os02g39070
Os.11948.1.S1_at--302--491Chr02:23595584..23595608 (25 bp)
ATCTGGCTTTTGCTCATTTTGCTAA
LOC_Os02g39070
Os.11948.1.S1_at--911--2111Chr02:23595694..23595718 (25 bp)
ACATGTGGATCTTTTAGCCTATTTC
LOC_Os02g39070
Target Sequence 
TGGTCTGTTTCTTCTCTTTGTCCGATGGCCTGTTGCTGGCATAATAATGGAGCTATATGGATCTTTTGTTCTCTTCAGTG
GTTATGGACCTCCTATCCAGGCCTTCCTATACCAGATTCCAGTCATTGGATGGATTCTGCAATACCCATTCCAGCTGTTT
GGTCAGTTCAGGCGTAAACGTGCATGACAACTCACGGCAGAAATTACCCTTCGTACGGGAGCATATTTTGTGATGTTAAT
ACGGAAACCTGCTGTGTACCATCTGCCACGATGCAGTTTAATTCTTGTGTGCATATTCATACTTTCGCCTTTCTAATCTG
GAGTTTATCTGGCTTTTGCTCATTTTGCTAACTGGCAGTAGTTTAGTGTTCATATATAGACGATGTAGAGGCTTCAAATG
ATTGTTGCTAGAAATTTGGGATCTGGGTTTAGCAAAACATGTGGATCTTTTAGCCTATTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11948.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis