Browse Element(s) Details


Os.11965.1.S1_at

Description gb:AK059625.1
DB_XREF= gi:32969643
TID=Os.11965.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11965 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023075I23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-030-H07, full insert sequence.
FL= gb:AK070989.1 gb:AK059625.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3715011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g37120Os.27022.1.A1_at11/112+22430203..22434986expressed protein
LOC_Os02g37120Os.27022.2.S1_at11/112+22430203..22434986expressed protein
LOC_Os02g37130Os.8246.1.S1_at11/112+22439133..22443096expressed protein
LOC_Os02g37140Os.20122.1.S1_at10/112+22446828..22451878pentatricopeptide, putative, expressed
LOC_Os02g37140Os.3774.2.S1_x_at1/112+22446828..22451878pentatricopeptide, putative, expressed
LOC_Os02g37150Os.11965.1.S1_at11/112+22453522..22456886expressed protein
LOC_Os02g37160Os.11252.1.S1_at11/112+22462319..22463919heavy metal-associated domain containing protein, expressed
LOC_Os02g37170OsAffx.2888.1.S1_at11/112+22465807..22466241hypothetical protein
LOC_Os02g37180Os.49112.1.S1_at9/112+22468765..22469820expressed protein
LOC_Os02g37190Os.7108.1.S1_at11/112+22471921..22473077expressed protein
LOC_Os02g37200Os.54430.1.S1_at2/112+22475779..22476610expressed protein
LOC_Os02g37210OsAffx.2889.1.S1_at11/112+22480288..22480518hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11965.1.S1_at--100--7391Chr02:22454749..22454773 (25 bp)
GTGAGCCAATACTCTGTTTGCTGGA
LOC_Os02g37150
Os.11965.1.S1_at--223--5651Chr02:22454700..22454724 (25 bp)
GACAGTTATTCTTTTTGCATCCGGT
LOC_Os02g37150
Os.11965.1.S1_at--520--1051Chr02:22453954..22453978 (25 bp)
AGGTGATCACTTGGCTAAGCACATC
LOC_Os02g37150
Os.11965.1.S1_at--1067--2251Chr02:22453884..22453908 (25 bp)
AAATCACCCGTCTTTCAGGAACCAT
LOC_Os02g37150
Os.11965.1.S1_at--465--5431Chr02:22453866..22453890 (25 bp)
GAACCATGGCGCGAACTGTACCAGT
LOC_Os02g37150
Os.11965.1.S1_at--1035--4391Chr02:22453825..22453849 (25 bp)
GCCAGCACCCTCTGAATTTAGTTTT
LOC_Os02g37150
Os.11965.1.S1_at--273--3111Chr02:22453733..22453757 (25 bp)
AATATGACGCTCTGTTTGCTTCTGT
LOC_Os02g37150
Os.11965.1.S1_at--615--10731Chr02:22453718..22453742 (25 bp)
TTGCTTCTGTTTACTTCCATCTTGA
LOC_Os02g37150
Os.11965.1.S1_at--382--10791Chr02:22453697..22453721 (25 bp)
TTGATCAACTGCTTCTCATTCCTTG
LOC_Os02g37150
Os.11965.1.S1_at--787--8591Chr02:22453621..22453645 (25 bp)
TGGTCAATCTGGTCTTCTGGCAATC
LOC_Os02g37150
Os.11965.1.S1_at--680--8491Chr02:22453604..22453628 (25 bp)
TGGCAATCCTAATTTTCCCAAGGGT
LOC_Os02g37150
Target Sequence 
GTGAGCCAATACTCTGTTTGCTGGAAATGGTACGTGTGTTGAATATACCGACAGTTATTCTTTTTGCATCCGGTGGGCAG
CACCAAGGAAAAAGCTCTACAGATGTGGACCTTGAGGTGCTGCAGTGTGNAGGTGATCACTTGGCTAAGCACATCAACTT
GGAATTCAGCAAAGAAACCGTTCTTCAGAGGGGGATCGAAAAATCACCCGTCTTTCAGGAACCATGGCGCGAACTGTACC
AGTGACAGAATTCTGGCATGCCAGCACCCTCTGAATTTAGTTTTGTAGGCCTTACATGTTGGACTAGTACGGTGTACCGG
AATGCTGGATTTATTCTGTCAAAGGGTGTGTAATATGACGCTCTGTTTGCTTCTGTTTACTTCCATCTTGATCAACTGCT
TCTCATTCCTTGCTGCCACTCTAGAGCAAAGCTCCTATAAAATTATAGAAGAAACCGCTGGACTGGTCAATCTGGTCTTC
TGGCAATCCTAATTTTCCCAAGGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11965.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis