Browse Element(s) Details


Os.11990.1.S1_a_at

Description gb:AK063070.1
DB_XREF= gi:32973088
TID=Os.11990.1
CNT=24
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11990 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0403C05.2 (P0403C05.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-110-H01, full insert sequence.
FL= gb:AK102787.1 gb:AK105652.1 gb:AK063070.1 gb:AK072138.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5579911/11Exo70 exocyst complex subunit family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g55770Os.5607.1.S1_at10/111+32450142..32454831expressed protein
LOC_Os01g55790OsAffx.11616.1.S1_at11/111+32457103..32457495hypothetical protein
LOC_Os01g55780Os.9693.1.S1_at10/111+32457439..32463839glycerophosphoryl diester phosphodiesterase family protein, putative, expressed
LOC_Os01g55799Os.11990.1.S1_a_at11/111+32464214..32470278Exo70 exocyst complex subunit family protein, expressed
LOC_Os01g55799Os.11990.1.S2_at11/111+32464214..32470278Exo70 exocyst complex subunit family protein, expressed
LOC_Os01g55820Os.37620.1.S1_at11/111+32472695..32474213expressed protein
LOC_Os01g55830Os.2241.1.S1_a_at11/111+32474993..32478920glutathione S-transferase GSTF2, putative, expressed
LOC_Os01g55840OsAffx.9423.1.S1_x_at11/111+32481123..32483001transposon protein, putative, unclassified
LOC_Os01g55850OsAffx.23802.1.S1_at11/111+32492288..32492644hypothetical protein
LOC_Os01g55860Os.23683.1.A1_at11/111+32494808..32497982expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006904biological_processvesicle docking during exocytosis
GO:0000145cellular_componentexocyst
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11990.1.S1_a_at--662--5651Chr01:32465184..32465207 (24 bp)
GACAGGCAAAAGTTCAGCGCCTCTA
LOC_Os01g55799
Os.11990.1.S1_a_at--993--9951Chr01:32465206..32465230 (25 bp)
TACCCCACAAGAGGCGATCGCGAGA
LOC_Os01g55799
Os.11990.1.S1_a_at--1067--6371Chr01:32465221..32465245 (25 bp)
GATCGCGAGACACTACGCTCTGCTG
LOC_Os01g55799
Os.11990.1.S1_a_at--166--2451Chr01:32465265..32465289 (25 bp)
AAAATCGCAGCATTTGCAGGCTCTC
LOC_Os01g55799
Os.11990.1.S1_a_at--704--9051Chr01:32465279..32465303 (25 bp)
TGCAGGCTCTCGCATCATTTTCAGT
LOC_Os01g55799
Os.11990.1.S1_a_at--401--171Chr01:32465295..32465319 (25 bp)
ATTTTCAGTCGCCACGTGATCCAGG
LOC_Os01g55799
Os.11990.1.S1_a_at--292--7251Chr01:32465660..32465684 (25 bp)
GTCCGTCTGCGAGCTGGAGATCGAC
LOC_Os01g55799
Os.11990.1.S1_a_at--189--2991Chr01:32465751..32465775 (25 bp)
AATGAACGCGCGATCGACGTGGAGT
LOC_Os01g55799
Os.11990.1.S1_a_at--1038--6911Chr01:32465794..32465818 (25 bp)
GTAGTAATCTTCAACGCGACACCAT
LOC_Os01g55799
Os.11990.1.S1_a_at--57--1631Chr01:32465807..32465831 (25 bp)
ACGCGACACCATTTATCTTTTTCAG
LOC_Os01g55799
Os.11990.1.S1_a_at--1120--9912Chr01:32465843..32465867 (25 bp)
TACGGAACCGATACTCTACTCTGAA
LOC_Os01g55799
Target Sequence 
GACAGGCAAAAGTTCAGCGCCTCTACCCCACAAGAGGCGATCGCGAGACACTACGCTCTGCTGCTGCGCGCATCGCCAGC
AGAAAATCGCAGCATTTGCAGGCTCTCGCATCATTTTCAGTCGCCACGTGATCCAGGTGGTGGTCGTCTGCGCGGCTCGG
CGGAGGAGGGCGGACATCCAGTCGGAGACGTACGTGCTGATGGAGCCAGGGGAGGAGGAGGAGTTCGTGAGCAANGGAGG
AGCTGGAGGGCAGGCTGAGGGGGTGGCTGGAGCGGTGGCCCGGCGGCGAGCTGCCGCCGGACCTCGCGAGGTTCGACACC
GTCGACGACGCCGTGTCGTACCTCGTCCGGTCCGTCTGCGAGCTGGAGATCGACGGCGAGGTCGGCTCCGTGCAGTGGTA
CCAGGTTCAGCTGGAGTAGAGTGGTTCTTGTGTGGAATGGAATGAACGCGCGATCGACGTGGAGTGATAGTTTATACACG
TACGTAGTAATCTTCAACGCGACACCATTTATCTTTTTCAGATTTAGAATTCTACGGAACCGATACTCTACTCTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11990.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis