Browse Element(s) Details


Os.11991.1.S1_at

Description gb:AK101288.1
DB_XREF= gi:32986497
TID=Os.11991.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.11991 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033033F16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033033F16, full insert sequence.
FL= gb:AK101288.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1052011/11Alcohol dehydrogenase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g10490OsAffx.32023.1.S1_at10/1111+5724289..5728101transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g10500OsAffx.10633.1.S1_at8/1111+5732590..5738801retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g10510Os.8815.1.S1_at11/1111+5740430..5743620Alcohol dehydrogenase 2, putative, expressed
LOC_Os11g10510Os.57464.1.S1_x_at1/1111+5740430..5743620Alcohol dehydrogenase 2, putative, expressed
LOC_Os11g10510Os.12591.2.S1_x_at1/1111+5740430..5743620Alcohol dehydrogenase 2, putative, expressed
LOC_Os11g10520Os.11991.1.S1_at11/1111+5751112..5755413Alcohol dehydrogenase 2, putative, expressed
LOC_Os11g10520Os.57464.1.S1_x_at1/1111+5751112..5755413Alcohol dehydrogenase 2, putative, expressed
LOC_Os11g10530OsAffx.30187.2.S1_at9/1111+5763714..5768096hypothetical protein
LOC_Os11g10530Os.55230.1.S1_at4/1111+5763714..5768096hypothetical protein
LOC_Os11g10530Os.55230.1.S1_x_at2/1111+5763714..5768096hypothetical protein
LOC_Os11g10530OsAffx.18968.1.S1_at1/1111+5763714..5768096hypothetical protein
LOC_Os11g10540OsAffx.18782.1.S1_at11/1111+5769517..5773026hypothetical protein
LOC_Os11g10550Os.50870.2.S1_at10/1111+5772483..5783307Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0001666biological_processresponse to hypoxia
GO:0045333biological_processcellular respiration
GO:0004022molecular_functionalcohol dehydrogenase activity
GO:0004327molecular_functionformaldehyde dehydrogenase (glutathione) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11991.1.S1_at--599--9291Chr11:5751518..5751542 (25 bp)
TCCGCTGCATCATCAGGATGGAGGA
LOC_Os11g10520
Os.11991.1.S1_at--1019--6171Chr11:5751498..5751522 (25 bp)
GAGGACTAGCCATCCAGATCGATGT
LOC_Os11g10520
Os.11991.1.S1_at--775--8331Chr11:5751453..5751477 (25 bp)
GGCGGCGACTGTATAAACGGAGAAA
LOC_Os11g10520
Os.11991.1.S1_at--709--9851Chr11:5751404..5751428 (25 bp)
TACAGCAATAAGCTAGCCACGGTTG
LOC_Os11g10520
Os.11991.1.S1_at--662--4391Chr11:5751389..5751413 (25 bp)
GCCACGGTTGCAGGAATGCGGTTTC
LOC_Os11g10520
Os.11991.1.S1_at--904--611Chr11:5751374..5751398 (25 bp)
ATGCGGTTTCAGGTTTGTTCATGGA
LOC_Os11g10520
Os.11991.1.S1_at--838--10191Chr11:5751234..5751258 (25 bp)
TATATATGCTGGCTCCACCGCTACA
LOC_Os11g10520
Os.11991.1.S1_at--175--10291Chr11:5751206..5751230 (25 bp)
TTTGCCGCCTTTCTGTATTGCGCAT
LOC_Os11g10520
Os.11991.1.S1_at--827--4811Chr11:5751179..5751203 (25 bp)
GCTCTCTCTAATGTAATGTGCAATC
LOC_Os11g10520
Os.11991.1.S1_at--951--5531Chr11:5751136..5751160 (25 bp)
GAAACATAATGTGCAATCTGTCAAT
LOC_Os11g10520
Os.11991.1.S1_at--1016--471Chr11:5751121..5751145 (25 bp)
ATCTGTCAATCTACATTCTGGTATG
LOC_Os11g10520
Target Sequence 
TCCGCTGCATCATCAGGATGGAGGACTAGCCATCCAGATCGATGTCGCCGCCGGCGATCGACGGCGGCGGCGACTGTATA
AACGGAGAAAATAAGAGGCTAAAACTACCTATNCNTACAGCAATAAGCTAGCCACGGTTGCAGGAATGCGGTTTCAGGTT
TGTTCATGGAGAACANGGGTGGACACAAATTATANATACTGTGAATTTTCTGAAAATTTACAAGACAAATANGAAATTGC
GCAAATTACNATAGCGGATNAGCCTTNNGCTCGATCNATTTGAGCCTATATATGCTGGCTCCACCGCTACACTGTTTGCC
GCCTTTCTGTATTGCGCATNTGCTCTCTCTAATGTAATGTGCAATCTATATATAANTANATTATGAAACATAATGTGCAA
TCTGTCAATCTACATTCTGGTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11991.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis