Browse Element(s) Details


Os.12007.1.S1_at

Description gb:AK066529.1
DB_XREF= gi:32976547
TID=Os.12007.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.12007 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013078M18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013073L01, full insert sequence.
FL= gb:AK066529.1 gb:AK071963.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2493011/11Protein kinase APK1A, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g24900Os.10674.1.S1_at11/113+14162432..14166957zinc finger family protein, putative, expressed
LOC_Os03g24910OsAffx.3315.1.S1_s_at11/113+14167517..14171210nodulation protein, putative, expressed
LOC_Os03g24920Os.36846.1.S1_at11/113+14174966..14178118ubiquitin, putative, expressed
LOC_Os03g24930Os.12007.1.S1_at11/113+14185785..14187966Protein kinase APK1A, chloroplast precursor, putative, expressed
LOC_Os03g24940Os.27135.1.A1_at11/113+14192013..14199487proline-rich family protein, putative, expressed
LOC_Os03g24940OsAffx.13012.1.S1_at11/113+14192013..14199487proline-rich family protein, putative, expressed
LOC_Os03g24940OsAffx.13012.1.S1_x_at11/113+14192013..14199487proline-rich family protein, putative, expressed
LOC_Os03g24940Os.48734.1.S1_s_at11/113+14192013..14199487proline-rich family protein, putative, expressed
LOC_Os03g24940Os.48734.1.S1_at4/113+14192013..14199487proline-rich family protein, putative, expressed
LOC_Os03g24950Os.16999.1.A1_at11/113+14212011..14214838expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12007.1.S1_at--492--7131Chr03:14187638..14187662 (25 bp)
GTCATCGCGAGTACGTATTTGTATA
LOC_Os03g24930
Os.12007.1.S1_at--1126--7471Chr03:14187670..14187694 (25 bp)
GTGTGTGTATATACTTTAGCTGCTG
LOC_Os03g24930
Os.12007.1.S1_at--1050--9991Chr03:14187686..14187710 (25 bp)
TAGCTGCTGTATAAGATGGCACGGC
LOC_Os03g24930
Os.12007.1.S1_at--572--851Chr03:14187701..14187725 (25 bp)
ATGGCACGGCCGATGTATTGTACGT
LOC_Os03g24930
Os.12007.1.S1_at--597--10811Chr03:14187718..14187742 (25 bp)
TTGTACGTGGTGATCATCGAGCTTG
LOC_Os03g24930
Os.12007.1.S1_at--826--71Chr03:14187777..14187801 (25 bp)
ATTGCGGAATTAATACTGATCTGTA
LOC_Os03g24930
Os.12007.1.S1_at--486--6411Chr03:14187794..14187818 (25 bp)
GATCTGTATCACCATATGTACGTAC
LOC_Os03g24930
Os.12007.1.S1_at--129--10051Chr03:14187823..14187847 (25 bp)
TAGGAGTATTTAGTTTTAGGTGCCA
LOC_Os03g24930
Os.12007.1.S1_at--922--8852Chr09:22481515..22481763 (25 bp)
TGATGCTGGTAGATCATGCATGCAT
NONE
Os.12007.1.S1_at--401--6591Chr03:14187900..14187924 (25 bp)
GATTGCTGATTGCAAGTTCGTGCAT
LOC_Os03g24930
Os.12007.1.S1_at--1007--6711Chr03:14187915..14187939 (25 bp)
GTTCGTGCATCAGTAATCGGTCATT
LOC_Os03g24930
Target Sequence 
GTCATCGCGAGTACGTATTTGTATACGTGTACGTGTGTGTATATACTTTAGCTGCTGTATAAGATGGCACGGCCGATGTA
TTGTACGTGGTGATCATCGAGCTTGATTGATTTTTTTTTAGCCATATGGATTATGGATTATTGCGGAATTAATACTGATC
TGTATCACCATATGTACGTACTTAGTAGGAGTATTTAGTTTTAGGTGCCANTGATGCTGGTAGATCATGCATGCATGTAT
GATGAATTGTACTTTCATCCACCNGATTGCTGATTGCAAGTTCGTGCATCAGTAATCGGTCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12007.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis