Browse Element(s) Details


Os.12036.1.S1_at

Description gb:AK102338.1
DB_XREF= gi:32987547
TID=Os.12036.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12036 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative chromaffin granule ATPase II homolog (OSJNBa0045B21.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033091A18, full insert sequence.
FL= gb:AK102038.1 gb:AK105868.1 gb:AK102338.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2723011/11endonuclease/exonuclease/phosphatase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g27200NANA10+14001256..14002210hypothetical protein
LOC_Os10g27210OsAffx.30558.1.S1_at11/1110+14002684..14003387hypothetical protein
LOC_Os10g27220Os.8958.1.S1_x_at11/1110+14010343..14014752Phospholipid-transporting ATPase 3, putative, expressed
LOC_Os10g27230Os.12036.1.S1_at11/1110+14025606..14031002endonuclease/exonuclease/phosphatase family protein, putative, expressed
LOC_Os10g27230Os.12036.2.S1_x_at7/1110+14025606..14031002endonuclease/exonuclease/phosphatase family protein, putative, expressed
LOC_Os10g27240OsAffx.29313.1.S1_at1/1110+14034536..14037925transposon protein, putative, Mutator sub-class
LOC_Os10g27250NANA10+14038443..14043050hypothetical protein
LOC_Os10g27260Os.2741.4.S1_x_at11/1110+14044620..14060603transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g27260Os.47463.1.S1_x_at5/1110+14044620..14060603transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g27260Os.14491.2.S1_x_at5/1110+14044620..14060603transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g27260OsAffx.8513.1.S1_s_at1/1110+14044620..14060603transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12036.1.S1_at--388--3391Chr10:14026428..14026452 (25 bp)
CAGCGGATTCATTGTCAGTGGAGTC
LOC_Os10g27230
Os.12036.1.S1_at--443--9271Chr10:14026349..14026373 (25 bp)
TCCTGAATGGTCTTCGGATCATATA
LOC_Os10g27230
Os.12036.1.S1_at--315--5211Chr10:14026312..14026336 (25 bp)
GAATTCCGGTGCAAGCCTAGAATCA
LOC_Os10g27230
Os.12036.1.S1_at--811--5751Chr10:14025917..14026311 (25 bp)
GACGGTGACACCTTAGGTCGCGAAT
LOC_Os10g27230
Os.12036.1.S1_at--321--7871Chr10:14025888..14025912 (25 bp)
GGTTAACTTCAGCACCCATGCGGTG
LOC_Os10g27230
Os.12036.1.S1_at--808--2511Chr10:14025862..14025886 (25 bp)
AACATTCTTCCATGGTGTGTGGGAC
LOC_Os10g27230
Os.12036.1.S1_at--678--1711Chr10:14025796..14025820 (25 bp)
ACCAGCACCAGCAGGCTTAGGGTAG
LOC_Os10g27230
Os.12036.1.S1_at--1--8291Chr10:14025783..14025807 (25 bp)
GGCTTAGGGTAGTGGCCTCATGAAA
LOC_Os10g27230
Os.12036.1.S1_at--584--8811Chr10:14025742..14025766 (25 bp)
TGATTACCTCTTACATTTCCAACTC
LOC_Os10g27230
Os.12036.1.S1_at--47--9631Chr10:14025719..14025743 (25 bp)
TCATGATGTTTTTAAGCGGCCCCAT
LOC_Os10g27230
Os.12036.1.S1_at--738--1571Chr10:14025705..14025729 (25 bp)
AGCGGCCCCATTGTAATATCACTTT
LOC_Os10g27230
Target Sequence 
CAGCGGATTCATTGTCAGTGGAGTCGTTGTTGGAACTTTTGGATGAGGAAAGTTTAAGAAAAGACACGGCCCTTCCTTCT
CCTGAATGGTCTTCGGATCATATAGCACTCTTGGCAGAATTCCGGTGCAAGCCTAGAATCAGACGGTGACACCTTAGGTC
GCGAATAGANGGTTAACTTCAGCACCCATGCGGTGGAACATTCTTCCATGGTGTGTGGGACTTGAGGAGGGATGGACGAA
AGCGGATCCTCGGGGAAGGACCACCAGCACCAGCAGGCTTAGGGTAGTGGCCTCATGAAAGGGAGGCTTGTAATGTTGAT
TACCTCTTACATTTCCAACTCATGATGTTTTTAAGCGGCCCCATTGTAATATCACTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12036.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis