Browse Element(s) Details


Os.12075.1.S1_a_at

Description gb:AK100344.1
DB_XREF= gi:32985553
TID=Os.12075.1
CNT=24
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12075 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative U2 snRNP auxiliary factor (OSJNBb0063G05.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023082F04, full insert sequence.
FL= gb:AK100344.1 gb:AK069287.1 gb:AK069011.1 gb:AK067662.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4774011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g47690Os.8765.1.S1_a_at10/111+27601570..27605404Hydroxyacylglutathione hydrolase 3, mitochondrial precursor, putative, expressed
LOC_Os01g47700NANA1+27608163..27608838expressed protein
LOC_Os01g47710Os.36185.1.S1_at11/111+27615611..27619511Homeobox domain containing protein, expressed
LOC_Os01g47710Os.36185.2.S1_x_at10/111+27615611..27619511Homeobox domain containing protein, expressed
LOC_Os01g47710Os.36185.2.S1_at10/111+27615611..27619511Homeobox domain containing protein, expressed
LOC_Os01g47720OsAffx.21516.2.S1_at11/111+27626870..27627196hypothetical protein
LOC_Os01g47730Os.41776.1.S1_at11/111+27628289..27629770Ras-related protein Rab11B, putative, expressed
LOC_Os01g47740Os.12075.1.S1_a_at11/111+27629959..27639153Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g47740Os.12075.1.S2_a_at10/111+27629959..27639153Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g47750NANA1+27644206..27648558Splicing factor U2AF 23 kDa subunit, putative, expressed
LOC_Os01g47760Os.11657.1.S1_at11/111+27652898..27653873glutaredoxin family protein, putative, expressed
LOC_Os01g47770Os.10221.1.S1_at11/111+27663108..27666183Nuclear movement protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12075.1.S1_a_at--467--9851Chr01:27633930..27633954 (25 bp)
TACAACCCCTGCATGTCGACAACAT
LOC_Os01g47740
Os.12075.1.S1_a_at--366--5431Chr01:27633901..27633925 (25 bp)
GAACCAATATGTTTCTCACACTCAG
LOC_Os01g47740
Os.12075.1.S1_a_at--1025--8771Chr01:27633892..27633916 (25 bp)
TGTTTCTCACACTCAGAGCTTCGGA
LOC_Os01g47740
Os.12075.1.S1_a_at--1047--5891Chr01:27633877..27633901 (25 bp)
GAGCTTCGGATTGCCATCAAACCAA
LOC_Os01g47740
Os.12075.1.S1_a_at--1083--3271Chr01:27633860..27633884 (25 bp)
CAAACCAAGTTGTTCTAGGAAGCAT
LOC_Os01g47740
Os.12075.1.S1_a_at--62--1431Chr01:27633544..27633568 (25 bp)
AGAATCAGCACAGCATGGTAATTAT
LOC_Os01g47740
Os.12075.1.S1_a_at--53--9071Chr01:27633520..27633544 (25 bp)
TGCATTTCCAACTAGTCACATCAGC
LOC_Os01g47740
Os.12075.1.S1_a_at--222--1171Chr01:27633507..27633531 (25 bp)
AGTCACATCAGCCAGTGCTTTCAAC
LOC_Os01g47740
Os.12075.1.S1_a_at--171--4431Chr01:27633497..27633521 (25 bp)
GCCAGTGCTTTCAACCTACTAGCAA
LOC_Os01g47740
Os.12075.1.S1_a_at--590--9731Chr01:27633481..27633505 (25 bp)
TACTAGCAATACATGGATTTCCCAG
LOC_Os01g47740
Os.12075.1.S1_a_at--358--7931Chr01:27633467..27633491 (25 bp)
GGATTTCCCAGTCTGCAAATGGTAT
LOC_Os01g47740
Target Sequence 
TACAACCCCTGCATGTCGACAACATCTATGAACCAATATGTTTCTCACACTCAGAGCTTCGGATTGCCATCAAACCAAGT
TGTTCTAGGAAGCATGGATGAAGGTAGCAGAAATGAAAATGCTGGTGAAAGTGCTAGAGGATTCATTAAAAGGAAAAATG
CTGCAGTTGCAGGAAGTTACCACTGTGCTAATGGATTTGCAAGTTCAAGCTCTTCTCATGCATCTCTGAATCCTACACAT
AGGCCATGGGATCCTTCTTTTGAGTCAAATGTTTTGCCTAACACTGCATCATATAACCCATCAGAGTACCATAGCCAGAC
CAGTTGGCCATCTATGGAAGGATCTTCCATTCCCAGTAATGGCTTTAATTTGATGGGTGCTCACCCAGAATCAGCACAGC
ATGGTAATTATGCATTTCCAACTAGTCACATCAGCCAGTGCTTTCAACCTACTAGCAATACATGGATTTCCCAGTCTGCA
AATGGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12075.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis