Browse Element(s) Details


Os.12075.1.S2_a_at

Description gb:AK069287.1
DB_XREF= gi:32979311
TID=Os.12075.1
CNT=24
FEA=FLmRNA
TIER=FL+Stack
STK=10
UG=Os.12075 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative U2 snRNP auxiliary factor (OSJNBb0063G05.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023010H14, full insert sequence.
FL= gb:AK100344.1 gb:AK069287.1 gb:AK069011.1 gb:AK067662.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4774010/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g47690Os.8765.1.S1_a_at10/111+27601570..27605404Hydroxyacylglutathione hydrolase 3, mitochondrial precursor, putative, expressed
LOC_Os01g47700NANA1+27608163..27608838expressed protein
LOC_Os01g47710Os.36185.1.S1_at11/111+27615611..27619511Homeobox domain containing protein, expressed
LOC_Os01g47710Os.36185.2.S1_x_at10/111+27615611..27619511Homeobox domain containing protein, expressed
LOC_Os01g47710Os.36185.2.S1_at10/111+27615611..27619511Homeobox domain containing protein, expressed
LOC_Os01g47720OsAffx.21516.2.S1_at11/111+27626870..27627196hypothetical protein
LOC_Os01g47730Os.41776.1.S1_at11/111+27628289..27629770Ras-related protein Rab11B, putative, expressed
LOC_Os01g47740Os.12075.1.S1_a_at11/111+27629959..27639153Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g47740Os.12075.1.S2_a_at10/111+27629959..27639153Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g47750NANA1+27644206..27648558Splicing factor U2AF 23 kDa subunit, putative, expressed
LOC_Os01g47760Os.11657.1.S1_at11/111+27652898..27653873glutaredoxin family protein, putative, expressed
LOC_Os01g47770Os.10221.1.S1_at11/111+27663108..27666183Nuclear movement protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12075.1.S2_a_at--1019--9911Chr01:27631259..27631283 (25 bp)
TACTGGTCTGGCAAAAAGCTACATT
LOC_Os01g47740
Os.12075.1.S2_a_at--12--5711Chr01:27631220..27631244 (25 bp)
GACTAGCTTATTTGTGCCAGGATCA
LOC_Os01g47740
Os.12075.1.S2_a_at--89--3491Chr01:27631203..27631227 (25 bp)
CAGGATCATCCTGCATGTCTAATAA
LOC_Os01g47740
Os.12075.1.S2_a_at--284--7151Chr01:27631178..27631202 (25 bp)
GTCTTCTGAATCTTCCATGGAGAAT
LOC_Os01g47740
Os.12075.1.S2_a_at--1070--3091NONE
AATATGCCAGGAAGAGTATCAGGTT
NONE
Os.12075.1.S2_a_at--1045--5251Chr01:27630528..27630552 (25 bp)
GAATGCATTGGAACCCTTGACTGTG
LOC_Os01g47740
Os.12075.1.S2_a_at--819--10731Chr01:27630512..27630536 (25 bp)
TTGACTGTGGCCACAGGTACCACGA
LOC_Os01g47740
Os.12075.1.S2_a_at--1096--4391Chr01:27630503..27630527 (25 bp)
GCCACAGGTACCACGAAGATTGCAT
LOC_Os01g47740
Os.12075.1.S2_a_at--415--8591Chr01:27630464..27630488 (25 bp)
TGGTAAAGAATTTATGCCCCATCTG
LOC_Os01g47740
Os.12075.1.S2_a_at--709--4171Chr01:27630447..27630471 (25 bp)
CCCATCTGCAAGACGACAGCTTTGT
LOC_Os01g47740
Os.12075.1.S2_a_at--16--4071Chr01:27630434..27630458 (25 bp)
CGACAGCTTTGTCAACCGGAAGAAG
LOC_Os01g47740
Target Sequence 
TACTGGTCTGGCAAAAAGCTACATTGTAGAGAAATTGAAGACTAGCTTATTTGTGCCAGGATCATCCTGCATGTCTAATA
AGTCTTCTGAATCTTCCATGGAGAATGATGCTTGCATAATATGCCAGGAAGAGTATCAGGTTAAAGAATGCATTGGAACC
CTTGACTGTGGCCACAGGTACCACGAAGATTGCATAAAACAATGGTTGATGGTAAAGAATTTATGCCCCATCTGCAAGAC
GACAGCTTTGTCAACCGGAAGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12075.1.S2_a_at     

Putative homologies in rice

Putative homologies in arabidopsis