Browse Element(s) Details


Os.12079.1.S1_at

Description gb:AK103052.1
DB_XREF= gi:32988261
TID=Os.12079.1
CNT=15
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.12079 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033117I03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033117I03, full insert sequence.
FL= gb:AK101208.1 gb:AK103052.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4086011/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g40820OsAffx.26410.1.S1_at11/114+24004372..24005437hypothetical protein
LOC_Os04g40830Os.52729.1.S1_at11/114+24010153..24017810Cullin family protein, expressed
LOC_Os04g40840Os.17516.1.S1_at11/114+24018045..24021616radical SAM domain-containing protein, putative, expressed
LOC_Os04g40850Os.15236.1.S1_at11/114+24021826..2402467526S proteasome non-ATPase regulatory subunit 6, putative, expressed
LOC_Os04g40860Os.12079.1.S1_at11/114+24024851..24028652transposon protein, putative, unclassified, expressed
LOC_Os04g40870Os.35089.1.S1_at11/114+24034237..24038366expressed protein
LOC_Os04g40880Os.373.1.S1_s_at11/114+24048790..24051074Nucleotide-binding protein 1, putative, expressed
LOC_Os04g40880Os.56121.1.S1_x_at11/114+24048790..24051074Nucleotide-binding protein 1, putative, expressed
LOC_Os04g40890OsAffx.29207.2.S1_at11/114+24053443..24053817hypothetical protein
LOC_Os04g40890OsAffx.29207.1.S1_x_at3/114+24053443..24053817hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12079.1.S1_at--36--171Chr04:24025416..24025440 (25 bp)
ATTATCTTTCCTGCGCTTGAGAGGA
LOC_Os04g40860
Os.12079.1.S1_at--117--5411Chr04:24025361..24025385 (25 bp)
GAAGCCTGACACTGAACGTACGCAA
LOC_Os04g40860
Os.12079.1.S1_at--941--5451Chr04:24025348..24025372 (25 bp)
GAACGTACGCAAGATCTTCTCAGAT
LOC_Os04g40860
Os.12079.1.S1_at--201--1271Chr04:24025327..24025351 (25 bp)
AGATCATGATTCTGCATTTTTCGGG
LOC_Os04g40860
Os.12079.1.S1_at--979--6371Chr04:24025202..24025226 (25 bp)
GATCCGACAATAACAACCCTGTGGG
LOC_Os04g40860
Os.12079.1.S1_at--880--3871Chr04:24025184..24025208 (25 bp)
CTGTGGGCACGCCTAATGGCAAATT
LOC_Os04g40860
Os.12079.1.S1_at--1144--10471Chr04:24025125..24025149 (25 bp)
TTACAGTCTTGCAATCCTTTAACCC
LOC_Os04g40860
Os.12079.1.S1_at--183--10491Chr04:24025107..24025131 (25 bp)
TTAACCCCATGTGCGATTCTCTGGA
LOC_Os04g40860
Os.12079.1.S1_at--1027--7991Chr04:24025011..24025035 (25 bp)
GGATGTCTTTGGTTTCCTGAGAACT
LOC_Os04g40860
Os.12079.1.S1_at--263--2731Chr04:24024960..24024984 (25 bp)
AAGAATTTCTGCGAGCTTTGCCCTA
LOC_Os04g40860
Os.12079.1.S1_at--148--5911Chr04:24024948..24024972 (25 bp)
GAGCTTTGCCCTATGTGTAGTCACA
LOC_Os04g40860
Target Sequence 
ATTATCTTTCCTGCGCTTGAGAGGAATGCAAGGGGTCACTGGAACCAAGCAGTTCGAAGCCTGACACTGAACGTACGCAA
GATCTTCTCAGATCATGATTCTGCATTTTTCGGGGAGTGCACACAGAAGTTCAACGACGATGAACTCAAGCAGGAAGAAT
CTAATTCGAAGCGAGAAGCTTTGTGGAAGCGCTTAGAGGAAGCGGCTGTCCCCAGATCCGACAATAACAACCCTGTGGGC
ACGCCTAATGGCAAATTCAGTCAAGCAGCTGGCTAGAAAATACCATAGCAATTACAGTCTTGCAATCCTTTAACCCCATG
TGCGATTCTCTGGAACTTGGTTTGTGATTTTAGTGTTGAAAATTTTTTGTTGGTGAGTTGGTTTCCCCCTTGTTCTAGGC
GGGTAGGATGTCTTTGGTTTCCTGAGAACTGCATGATGAAAAATGTACACATACAGAAGAATTTCTGCGAGCTTTGCCCT
ATGTGTAGTCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12079.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis