Browse Element(s) Details

Os.12096.4.S1_s_at

Description

gb:AY324879.1
DB_XREF= gi:34538930
TID=Os.12096.4
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12096 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) ferritin mRNA, complete cds.
PROD=ferritin
FL= gb:AY324879.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os11g01530	11/11	Ferritin 1, chloroplast precursor, putative, expressed
LOC_Os12g01530	11/11	Ferritin 1, chloroplast precursor, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os11g01470	NA	NA	11	+	271765..279565	retrotransposon protein, putative, unclassified
LOC_Os11g01480	Os.18448.1.S1_s_at	11/11	11	+	280488..282849	myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os11g01480	OsAffx.30765.1.S1_at	11/11	11	+	280488..282849	myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os11g01490	Os.28272.2.S1_at	11/11	11	+	284152..289156	outer membrane protein, OMP85 family protein
LOC_Os11g01490	Os.28272.1.S1_x_at	11/11	11	+	284152..289156	outer membrane protein, OMP85 family protein
LOC_Os11g01490	Os.28272.1.S1_at	11/11	11	+	284152..289156	outer membrane protein, OMP85 family protein
LOC_Os11g01500	NA	NA	11	+	290960..291905	hypothetical protein
LOC_Os11g01510	Os.5283.1.S1_at	11/11	11	+	294669..300588	Ubiquitin-activating enzyme E1 2, putative, expressed
LOC_Os11g01520	NA	NA	11	+	301445..301804	hypothetical protein
LOC_Os11g01530	OsAffx.30767.1.S1_at	11/11	11	+	304439..306720	Ferritin 1, chloroplast precursor, putative, expressed
LOC_Os11g01530	Os.12096.4.S1_s_at	11/11	11	+	304439..306720	Ferritin 1, chloroplast precursor, putative, expressed
LOC_Os11g01530	Os.12096.3.S1_x_at	1/11	11	+	304439..306720	Ferritin 1, chloroplast precursor, putative, expressed
LOC_Os11g01540	OsAffx.31540.2.S1_s_at	11/11	11	+	307804..309616	expressed protein
LOC_Os11g01540	OsAffx.31540.2.S1_at	10/11	11	+	307804..309616	expressed protein
LOC_Os11g01550	Os.56072.1.S1_at	7/11	11	+	313616..314451	LOB domain protein 12, putative, expressed
LOC_Os11g01570	Os.6019.1.S1_at	11/11	11	+	328051..331822	expressed protein

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Gene Ontology Classification

GO id	Type	Name
GO:0006826	biological_process	iron ion transport
GO:0006879	biological_process	iron ion homeostasis
GO:0009617	biological_process	response to bacteria
GO:0009737	biological_process	response to abscisic acid stimulus
GO:0010039	biological_process	response to iron ion
GO:0042542	biological_process	response to hydrogen peroxide
GO:0009507	cellular_component	chloroplast
GO:0005506	molecular_function	iron ion binding
GO:0008199	molecular_function	ferric iron binding
GO:0016798	molecular_function	hydrolase activity, acting on glycosyl bonds

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.12096.4.S1_s_at--819--731	2	Chr12:322444..322468 (25 bp)	GTGCTCAGCGGCGTGGTCTTCCAGC	LOC_Os12g01530
Os.12096.4.S1_s_at--521--859	2	Chr12:322431..322455 (25 bp)	TGGTCTTCCAGCCATTCGAGGAGCT	LOC_Os12g01530
Os.12096.4.S1_s_at--397--1069	2	Chr12:322426..322450 (25 bp)	TTCCAGCCATTCGAGGAGCTCAAGG	LOC_Os12g01530
Os.12096.4.S1_s_at--721--399	2	Chr12:321549..321573 (25 bp)	CGTGACAACGTTGCTCTCAAGGGAT	LOC_Os12g01530
Os.12096.4.S1_s_at--989--903	2	Chr12:321542..321562 (21 bp)	TGCTCTCAAGGGATTCGCCAAATTC	LOC_Os12g01530
Os.12096.4.S1_s_at--82--107	2	Chr12:321450..321554 (25 bp)	AGGGATTCGCCAAATTCTTCAAAGA	LOC_Os12g01530
Os.12096.4.S1_s_at--143--1057	2	Chr12:321436..321460 (25 bp)	TTCTTCAAAGAATCCAGCGATGAGG	LOC_Os12g01530
Os.12096.4.S1_s_at--927--283	2	Chr12:321283..321409 (25 bp)	AAGTACCAGAACATGCGTGGAGGCA	LOC_Os12g01530
Os.12096.4.S1_s_at--658--1075	2	Chr12:321229..321253 (25 bp)	TTGACAGAGTTCGACCATCCTGAGA	LOC_Os12g01530
Os.12096.4.S1_s_at--50--135	2	Chr12:321224..321248 (25 bp)	AGAGTTCGACCATCCTGAGAAAGGG	LOC_Os12g01530
Os.12096.4.S1_s_at--734--753	2	Chr12:319886..319910 (25 bp)	GTGGCACTTTGATCAGAAGCTGCTT	LOC_Os12g01530

Target Sequence

GTGCTCAGCGGCGTGGTCTTCCAGCCATTCGAGGAGCTCAAGGGGGAGCTCTCCCTCGTCCCCCAGGCCAAGGACCAGTC
TCTTGCTAGGCAAAAGTTCGTCGACGAGTGCGAGGCCGCCATCAGCGAGCAGATCAATGTGGAGTTCAATGCATCGTACG
CGTACCACTCCCTTTTCGCCTACTTTGACCGTGACAACGTTGCTCTCAAGGGATTCGCCAAATTCTTCAAAGAATCCAGC
GATGAGGAGAGGGATCACGCAGAGAAACTCATGAAGTACCAGAACATGCGTGGAGGCAGGGTGCGGCTCCAGTCCATCGT
CACACCCTTGACAGAGTTCGACCATCCTGAGAAAGGGGATGCCTTGTATGGGGTGTGGCACTTTGATCAGAAGCTGCTT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis