Browse Element(s) Details


Os.12103.1.S1_at

Description gb:AK068677.1
DB_XREF= gi:32978694
TID=Os.12103.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12103 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013159B19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013159B19, full insert sequence.
FL= gb:AK058354.1 gb:AK068677.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g322209/11Protein pob, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32190OsAffx.30113.1.S1_at11/119+19209497..19212232tRNA-splicing endonuclease positive effector, putative
LOC_Os09g32200Os.47929.1.S1_at11/119+19215466..19219305Mitochondrial carrier protein, expressed
LOC_Os09g32210Os.13605.1.S1_at11/119+19220106..19227154Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os09g32220Os.12103.1.S1_at9/119+19234783..19238291Protein pob, putative, expressed
LOC_Os09g32230Os.53462.1.S1_at11/119+19238835..19240324Papain family cysteine protease containing protein, expressed
LOC_Os09g32240Os.8791.1.S1_at11/119+19240606..19244000lipid-binding serum glycoprotein family protein, putative, expressed
LOC_Os09g32240OsAffx.16011.1.S1_at1/119+19240606..19244000lipid-binding serum glycoprotein family protein, putative, expressed
LOC_Os09g32250Os.6203.1.S1_at11/119+19244513..19249906DNA repair ATPase, putative, expressed
LOC_Os09g32260Os.54203.1.S1_at10/119+19252877..19255544No apical meristem protein, expressed
LOC_Os09g32270Os.9485.1.S1_at11/119+19263096..19267132ribosomal protein S16 containing protein, expressed
LOC_Os09g32270Os.12229.1.S1_at11/119+19263096..19267132ribosomal protein S16 containing protein, expressed
LOC_Os09g32270OsAffx.30114.1.S1_s_at10/119+19263096..19267132ribosomal protein S16 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12103.1.S1_at--497--10551NONE
TTCTTTTCGGGTTTTGTTGCAGCTA
NONE
Os.12103.1.S1_at--892--1571Chr09:19236856..19236880 (25 bp)
AGCTAAGATTCCCTTTCCATTGACT
LOC_Os09g32220
Os.12103.1.S1_at--699--5251Chr09:19236894..19236918 (25 bp)
GAATGCTGCAAAACGGGATAGACCT
LOC_Os09g32220
Os.12103.1.S1_at--763--4271Chr09:19236916..19236940 (25 bp)
CCTGAGTACTGTTGATGTGAGCTAT
LOC_Os09g32220
Os.12103.1.S1_at--912--5891Chr09:19236934..19236958 (25 bp)
GAGCTATGTTAGCAGCCGTTCATGG
LOC_Os09g32220
Os.12103.1.S1_at--749--1671Chr09:19236947..19237082 (25 bp)
AGCCGTTCATGGTACTTTCTCAATT
LOC_Os09g32220
Os.12103.1.S1_at--107--10531Chr09:19237103..19237127 (25 bp)
TTCAGTCTGATCCTCGGTGAAGAAA
LOC_Os09g32220
Os.12103.1.S1_at--1127--6511Chr09:19237277..19237300 (24 bp)
GATTTGGCGGTAATCCCACAATGGG
LOC_Os09g32220
Os.12103.1.S1_at--539--531NONE
ATCCCACAATGGGTTTGGCCGCAGA
NONE
Os.12103.1.S1_at--653--8151Chr09:19238063..19238087 (25 bp)
GGAAACTAGGCTGCTCCAATGCATT
LOC_Os09g32220
Os.12103.1.S1_at--1057--2391Chr09:19238209..19238229 (21 bp)
AAAAACGGACCACAGCCAGGCTCAA
LOC_Os09g32220
Target Sequence 
TTCTTTTCGGGTTTTGTTGCAGCTAAGATTCCCTTTCCATTGACTCCGCGATTCAGGGGAATGCTGCAAAACGGGATAGA
CCTGAGTACTGTTGATGTGAGCTATGTTAGCAGCCGTTCATGGTACTTTCTCAATTTGTTTGGTTTGAGGGGTCTCTTCA
GTCTGATCCTCGGTGAAGAAAATGCTAATGATGATGCACAAAAGATGATGCAGATGGGTGGGGGATTTGGCGGTAATCCC
ACAATGGGTTTGGCCGCAGAGAAAGACAACCTGGATATAATCCAGCATGACTGGGCTTTACCAAAGATGGAGCATCATGC
TGAGGAAGTGCTGAGGAAGCTTCTGAAGAAATGATAGGAAACTAGGCTGCTCCAATGCATTACTACATCTTGCAAAATTT
TTGTTTTAACCTGTTTATTGACCAGACAGTTAAAACTTTGTATCTGTATAACTTATGGCCAAGAATTTCCTTCAGAAAGT
TTATGTATCATTTTTCTGTTATAAAAAAACGGACCACAGCCAGGCTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12103.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis