Browse Element(s) Details


Os.1215.1.S1_at

Description gb:AB056061.1
DB_XREF= gi:13111469
TID=Os.1215.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.1215 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) GAD mRNA for glutamate decarboxylase, complete cds, clone:OsGAD2
DEF=Oryza sativa (japonica cultivar-group) GAD mRNA for glutamate decarboxylase, complete cds, clone:OsGAD2.
FL= gb:AB056061.1 gb:AK068340.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3750011/11Glutamate decarboxylase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g37430OsAffx.26361.1.S1_x_at11/114+22085990..22090232Lipoxygenase 5, putative, expressed
LOC_Os04g37430OsAffx.26361.1.S1_at11/114+22085990..22090232Lipoxygenase 5, putative, expressed
LOC_Os04g37440OsAffx.14175.1.S1_at11/114+22093180..22093638hypothetical protein
LOC_Os04g37450Os.57139.1.S1_at11/114+22094083..22094851expressed protein
LOC_Os04g37460Os.12927.1.S1_at11/114+22095005..22097350Glutamate decarboxylase, putative, expressed
LOC_Os04g37470Os.21320.1.S1_at10/114+22097743..22100498NADH dependent 6'-deoxychalcone synthase, putative, expressed
LOC_Os04g37480Os.8600.1.S1_at11/114+22102247..22104485NADH-dependent oxidoreductase 1, putative, expressed
LOC_Os04g37490Os.11816.1.S1_at11/114+22104786..22107807NADH-dependent oxidoreductase 2, putative, expressed
LOC_Os04g37500Os.1215.1.S1_at11/114+22111117..22113470Glutamate decarboxylase, putative, expressed
LOC_Os04g37510OsAffx.26362.1.S1_at11/114+22113602..22114033uncharacterized plant-specific domain TIGR01568 family protein
LOC_Os04g37520OsAffx.4008.1.S1_at11/114+22115957..22118200expressed protein
LOC_Os04g37520Os.49478.1.S1_at1/114+22115957..22118200expressed protein
LOC_Os04g37530OsAffx.26363.1.S1_at11/114+22118427..22120817expressed protein
LOC_Os04g37540Os.17444.1.S1_a_at11/114+22121721..22127414expressed protein
LOC_Os04g37550Os.18235.1.S1_at10/114+22128884..22130725Eukaryotic aspartyl protease family protein, expressed
LOC_Os04g37560OsAffx.14176.1.S1_at11/114+22131351..22131599hypothetical protein
LOC_Os04g37570OsAffx.26364.1.S1_at11/114+22134740..22136134Eukaryotic aspartyl protease family protein
LOC_Os04g37580Os.5960.1.S1_at11/114+22136263..22138900ChaC-like protein, expressed
LOC_Os04g37580Os.5217.1.S1_at7/114+22136263..22138900ChaC-like protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006536biological_processglutamate metabolism
GO:0006807biological_processnitrogen compound metabolism
GO:0004351molecular_functionglutamate decarboxylase activity
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1215.1.S1_at--1014--1051Chr04:22112973..22112997 (25 bp)
AGGGTGCAGCTCACCATCGAGCTCG
LOC_Os04g37500
Os.1215.1.S1_at--188--4291Chr04:22113025..22113049 (25 bp)
CCTCGATCAGGGTGGTCAAGAGCGA
LOC_Os04g37500
Os.1215.1.S1_at--781--4471Chr04:22113084..22113108 (25 bp)
GCCGGCAAAACCAAGGGCGTTTGCT
LOC_Os04g37500
Os.1215.1.S1_at--983--5871Chr04:22113174..22113198 (25 bp)
GAGCGTACTAAACCTTCTTTATGCT
LOC_Os04g37500
Os.1215.1.S1_at--764--2631Chr04:22113184..22113208 (25 bp)
AACCTTCTTTATGCTACAGTAACTA
LOC_Os04g37500
Os.1215.1.S1_at--595--2031Chr04:22113205..22113229 (25 bp)
ACTATGTAGTACAAGCATGCCGAAA
LOC_Os04g37500
Os.1215.1.S1_at--82--6771Chr04:22113230..22113254 (25 bp)
GTTAATCATCGTGTGTAATCGTATT
LOC_Os04g37500
Os.1215.1.S1_at--966--9731Chr04:22113245..22113269 (25 bp)
TAATCGTATTAGAGTTTGCAACAGC
LOC_Os04g37500
Os.1215.1.S1_at--1161--5311Chr04:22113329..22113353 (25 bp)
GAAGTTCTGAAACCCATAAGGATTC
LOC_Os04g37500
Os.1215.1.S1_at--972--3511Chr04:22113409..22113433 (25 bp)
CATGCACATCATGCTTGAGCACGTT
LOC_Os04g37500
Os.1215.1.S1_at--460--4931Chr04:22113421..22113445 (25 bp)
GCTTGAGCACGTTATTGTTGCAGAA
LOC_Os04g37500
Target Sequence 
AGGGTGCAGCTCACCATCGAGCTCGGCCCCGCCCGGACCGCCGGCGAGGAGGCCTCGATCAGGGTGGTCAAGAGCGAGGC
CGTGCCCGTGCGCAAGAGCGTCCCGCTCGTCGCCGGCAAAACCAAGGGCGTTTGCTAGACCGGGTTAAATTTTTTTTTAA
AATACTGGTGGGAACACGACCAAAATAAAATTTCAAAATGGGAGCGTACTAAACCTTCTTTATGCTACAGTAACTATGTA
GTACAAGCATGCCGAAAGTTAATCATCGTGTGTAATCGTATTAGAGTTTGCAACAGCATATTATAATGTGGAGAAGAACA
CGCAAGCGACATCAANNANNANNNNNNANNNCTGATGAAGTTCTGAAACCCATAAGGATTCAGATAAACATGAGCAGACA
CTGAAATATGTATGTACATAAAAAATTTGTGCGAGGCATGCACATCATGCTTGAGCACGTTATTGTTGCAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1215.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis