Browse Element(s) Details


Os.12193.1.S1_at

Description gb:D37886.1
DB_XREF= gi:529093
TID=Os.12193.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12193 (NCBI UniGene Cluster)
DEF=Rice mRNA for proteasome C2 subunit, complete cds.
PROD=proteasome C2 subunit
FL= gb:AK109376.2 gb:D37886.1 gb:AK103646.1 gb:AK059589.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0410011/11Proteasome subunit alpha type 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g04050NANA2+1758439..1764006SMC proteins Flexible Hinge Domain containing protein
LOC_Os02g04060NANA2+1766071..1767766SMC family, C-terminal domain containing protein
LOC_Os02g04070NANA2+1768220..1772620retrotransposon protein, putative, unclassified
LOC_Os02g04080NANA2+1773173..1779320SMC proteins Flexible Hinge Domain containing protein
LOC_Os02g04090OsAffx.15996.1.S1_x_at4/112+1780356..1782004retrotransposon protein, putative, LINE subclass
LOC_Os02g04090OsAffx.27850.1.A1_at1/112+1780356..1782004retrotransposon protein, putative, LINE subclass
LOC_Os02g04100Os.12193.1.S1_at11/112+1784573..1788080Proteasome subunit alpha type 1, putative, expressed
LOC_Os02g04110Os.54956.1.S1_at11/112+1788746..1792353expressed protein
LOC_Os02g04110OsAffx.24091.1.S1_at10/112+1788746..1792353expressed protein
LOC_Os02g04120NANA2+1793713..1796926Cytidylyltransferase family protein, expressed
LOC_Os02g04130Os.27915.1.S1_at11/112+1799750..1800811expressed protein
LOC_Os02g04130OsAffx.25637.1.S1_at1/112+1799750..1800811expressed protein
LOC_Os02g04140NANA2+1803724..1807030retrotransposon protein, putative, unclassified
LOC_Os02g04150NANA2+1807655..1813810retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0030163biological_processprotein catabolism
GO:0000502cellular_componentproteasome complex (sensu Eukaryota)
GO:0005839cellular_componentproteasome core complex (sensu Eukaryota)
GO:0008233molecular_functionpeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12193.1.S1_at--643--4531Chr02:1787486..1787510 (25 bp)
GCCCCAGCGGCAACTATTTTGAGTA
LOC_Os02g04100
Os.12193.1.S1_at--950--6971Chr02:1787508..1787532 (25 bp)
GTACCAGGCATTTGCTATTGGCTCT
LOC_Os02g04100
Os.12193.1.S1_at--891--2751Chr02:1787548..1787572 (25 bp)
AAGACTTTCCTTGAGCGCAGATTCG
LOC_Os02g04100
Os.12193.1.S1_at--124--5091Chr02:1787702..1787726 (25 bp)
GCACCGTTGAGCCATTTGAGATGAT
LOC_Os02g04100
Os.12193.1.S1_at--373--4551Chr02:1787841..1787865 (25 bp)
GCCCATGGACATCTAGGCCCAAGAT
LOC_Os02g04100
Os.12193.1.S1_at--10--3571Chr02:1787882..1787906 (25 bp)
CTTACACCGTGTCTGAGTTTCCAAA
LOC_Os02g04100
Os.12193.1.S1_at--1092--5551Chr02:1787921..1787945 (25 bp)
GAAAGCTGTGACTGTTGTGTACCCT
LOC_Os02g04100
Os.12193.1.S1_at--1069--7431Chr02:1787937..1787961 (25 bp)
GTGTACCCTTTCTTCAGTACTACAA
LOC_Os02g04100
Os.12193.1.S1_at--163--7011Chr02:1787953..1787977 (25 bp)
GTACTACAACTTTGCGACGGTCTCT
LOC_Os02g04100
Os.12193.1.S1_at--325--7811Chr02:1787971..1787995 (25 bp)
GGTCTCTTTGATCAACATCGATTGT
LOC_Os02g04100
Os.12193.1.S1_at--904--7631Chr02:1788049..1788073 (25 bp)
GGGACCAGATTACGTTTGCTTATCA
LOC_Os02g04100
Target Sequence 
GCCCCAGCGGCAACTATTTTGAGTACCAGGCATTTGCTATTGGCTCTCGCTCTCAAGCCGCCAAGACTTTCCTTGAGCGC
AGATTCGAGGGCTACAACGACTACACCCCAGAGCAACTTATCAAAGATGCCCTCTCCGCCATAAAGGAGACGCTGCAAGG
TGAGAAGCTAACCAGCTCCAACTGCACCGTTGCTATTGTTGGCAGAAAGGACGATGGCACCGTTGAGCCATTTGAGATGA
TCGACGTGAAGAGGATCCAAGAAATAATCGATTCCATGGAGGCTGCCGAGGAGGCACCAGCGGCAGAGGCTGAGTCGAGC
TCGATGCAGGAGGAGGACAAGGGCACGGACGCCGCGCCCATGGACATCTAGGCCCAAGATACATCTTATCTCCTCCCTTA
CACCGTGTCTGAGTTTCCAAAAGACTACTGTTTTAGAAAGCTGTGACTGTTGTGTACCCTTTCTTCAGTACTACAACTTT
GCGACGGTCTCTTTGATCAACATCGATTGTGTTTTGGACCGATTATTTACATGTGATGCGGACAGAAAATCTCTTTGGTT
TCGGGGACCAGATTACGTTTGCTTATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12193.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis