Browse Element(s) Details


Os.12200.1.S1_s_at

Description gb:AK103358.1
DB_XREF= gi:32988567
TID=Os.12200.1
CNT=36
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.12200 (NCBI UniGene Cluster)
UG_TITLE=Glutathione s-transferase (GST1) mRNA, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033126L16, full insert sequence.
FL= gb:AK103358.1 gb:AF050102.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5720011/11glutathione S-transferase GSTU1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g57160Os.24550.1.S1_at11/113+32530682..32537963expressed protein
LOC_Os03g57170Os.49156.1.S1_at10/113+32538196..32541150LEM3 family/CDC50 family protein, expressed
LOC_Os03g57180OsAffx.25741.1.S1_at11/113+32542335..32542706hypothetical protein
LOC_Os03g57190Os.19844.1.S1_at11/113+32553330..32557193TCP family transcription factor containing protein, expressed
LOC_Os03g57200Os.12200.1.S1_s_at11/113+32558178..32559224glutathione S-transferase GSTU1, putative, expressed
LOC_Os03g57210Os.9472.1.S1_at11/113+32563547..32566812expressed protein
LOC_Os03g57220Os.12394.1.S1_at10/113+32567478..32571470expressed protein
LOC_Os03g57230OsAffx.3630.1.S1_at10/113+32571688..32572681hypothetical protein
LOC_Os03g57230OsAffx.23380.1.S1_at1/113+32571688..32572681hypothetical protein
LOC_Os03g57230Os.20851.1.A1_x_at1/113+32571688..32572681hypothetical protein
LOC_Os03g57230OsAffx.5035.1.S1_at1/113+32571688..32572681hypothetical protein
LOC_Os03g57230Os.55580.1.S1_at1/113+32571688..32572681hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006979biological_processresponse to oxidative stress
GO:0009407biological_processtoxin catabolism
GO:0042631biological_processcellular response to water deprivation
GO:0005737cellular_componentcytoplasm
GO:0004364molecular_functionglutathione transferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12200.1.S1_s_at--985--9931Chr03:32558739..32558763 (25 bp)
TACGTCGACAGGAAGCTCTACGACT
LOC_Os03g57200
Os.12200.1.S1_s_at--949--8171Chr03:32558729..32558753 (25 bp)
GGAAGCTCTACGACTGCGGGTCCAG
LOC_Os03g57200
Os.12200.1.S1_s_at--596--1451Chr03:32558423..32558447 (25 bp)
AGAAGGTCTACGACTTCGTCGGCGT
LOC_Os03g57200
Os.12200.1.S1_s_at--921--511Chr03:32558346..32558370 (25 bp)
ATCGATTGGCGGTTGCGTTCGCTAC
LOC_Os03g57200
Os.12200.1.S1_s_at--3--10171Chr03:32558329..32558353 (25 bp)
TTCGCTACGTGAACGATTCGTCCGT
LOC_Os03g57200
Os.12200.1.S1_s_at--155--111Chr03:32558314..32558338 (25 bp)
ATTCGTCCGTTGTTTCAGTGGCCAA
LOC_Os03g57200
Os.12200.1.S1_s_at--1050--10531Chr03:32558301..32558325 (25 bp)
TTCAGTGGCCAAGTGTGTGTGAGTT
LOC_Os03g57200
Os.12200.1.S1_s_at--980--7471Chr03:32558287..32558311 (25 bp)
GTGTGTGAGTTTGTTGTTACCGTTG
LOC_Os03g57200
Os.12200.1.S1_s_at--425--8791Chr03:32558273..32558297 (25 bp)
TGTTACCGTTGAGTGCTTGTGTGTG
LOC_Os03g57200
Os.12200.1.S1_s_at--556--7531Chr03:32558239..32558263 (25 bp)
GTGGCAGCAGAGAGTTGCCTCCGAT
LOC_Os03g57200
Os.12200.1.S1_s_at--347--9191Chr03:32558224..32558248 (25 bp)
TGCCTCCGATTCTCTGAGATTGTCA
LOC_Os03g57200
Target Sequence 
TACGTCGACAGGAAGCTCTACGACTGCGGGTCCAGGCTGTGGAGGCTCAAGGGTGANGCCGCAGGCGGCGGCGGGGCGCG
AGATGGCGGAGATCCTCCGCACGCTGGAGGCGGAGCTCGGCGACCGGGAGTTCTTCGGCGGCGGCGGCGGCGGCAGGCTC
GGGTTCGTCGACGTCGCGCTCGTGCCGTTCACGGCGTGGTTCTACAGCTACTGAGAGGTGCGGCGGGTTCAGCGTGGAGG
AGGTGGCGCCGAGGCTGGCGGCGTGGGCGCGGCGGTGCGGCCGGATNCGACTCCGTCGTCAAGCACCTCCCCTCGCCGGA
GAAGGTCTACGACTTCGTCGGCGTCCTCAAGAAGAAGTACGGCGTCGAGTAGATCGGTGGATGCGAAGTTGCAGGGATCG
ATTGGCGGTTGCGTTCGCTACGTGAACGATTCGTCCGTTGTTTCAGTGGCCAAGTGTGTGTGAGTTTGTTGTTACCGTTG
AGTGCTTGTGTGTGGGATGGTTGGTGGCAGCAGAGAGTTGCCTCCGATTCTCTGAGATTGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12200.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis