Browse Element(s) Details


Os.12214.1.S1_at

Description gb:AK065613.1
DB_XREF= gi:32975631
TID=Os.12214.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12214 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013026M04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013026M04, full insert sequence.
FL= gb:AK065613.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3935011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g39320OsAffx.30205.1.S1_at11/119+22598493..22607817CTR1-like protein kinase, putative, expressed
LOC_Os09g39330OsAffx.18057.1.S1_at11/119+22609915..22619148retrotransposon protein, putative, unclassified, expressed
LOC_Os09g39334Os.53474.1.S1_at10/119+22622263..22623247expressed protein
LOC_Os09g39340OsAffx.30206.1.S1_at10/119+22624664..22627016hypothetical protein
LOC_Os09g39350Os.12214.1.S1_at11/119+22630629..22633014expressed protein
LOC_Os09g39360Os.52790.1.S1_at11/119+22634997..22637833expressed protein
LOC_Os09g39370OsAffx.30207.1.S1_at11/119+22638131..22640118hypothetical protein
LOC_Os09g39380Os.6239.1.S1_at8/119+22644422..22648010Monodehydroascorbate reductase, putative, expressed
LOC_Os09g39390Os.6765.1.S1_a_at11/119+22648606..22651602oxidoreductase, aldo/keto reductase family protein, expressed
LOC_Os09g39400Os.4702.1.S1_at11/119+22653383..22656565Histidine-containing phosphotransfer protein 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12214.1.S1_at--701--6011Chr09:22631687..22631711 (25 bp)
GAGAGACTCCACATAGGTCATCCCT
LOC_Os09g39350
Os.12214.1.S1_at--309--7771Chr09:22631616..22631640 (25 bp)
GGTCGACCACCGTGATTACAAGGCA
LOC_Os09g39350
Os.12214.1.S1_at--149--931Chr09:22631596..22631620 (25 bp)
AGGCATGGGTCATTCCTGTTGACAT
LOC_Os09g39350
Os.12214.1.S1_at--931--8311Chr09:22631563..22631587 (25 bp)
GGCTCATACATGAACCAGCTGTTTT
LOC_Os09g39350
Os.12214.1.S1_at--72--1731Chr09:22631550..22631574 (25 bp)
ACCAGCTGTTTTTGAGGGTGCTCCG
LOC_Os09g39350
Os.12214.1.S1_at--611--6991Chr09:22631524..22631548 (25 bp)
GTACTCTTGGCATAGGTTCCACCTT
LOC_Os09g39350
Os.12214.1.S1_at--746--4271Chr09:22630945..22630969 (25 bp)
CCTGGGATGTTGCTGGGATCCTCAA
LOC_Os09g39350
Os.12214.1.S1_at--626--4491Chr09:22630913..22630937 (25 bp)
GAAGTCCGAAACTCCCTATTTGACA
LOC_Os09g39350
Os.12214.1.S1_at--787--2191Chr09:22630891..22630915 (25 bp)
ACAAATGTGGTGCTGCCACTGCCAA
LOC_Os09g39350
Os.12214.1.S1_at--9--1411Chr09:22630721..22630745 (25 bp)
AGACTATGATCCCTCGGTTATTCTC
LOC_Os09g39350
Os.12214.1.S1_at--46--10611Chr09:22630638..22630662 (25 bp)
TTCTGTCCTATCTATGTGGTACACT
LOC_Os09g39350
Target Sequence 
GAGAGACTCCACATAGGTCATCCCTTGCTCAGTTTGGACAACAATGGCGATGTTGTTTACTTCATGGCCAAGGTCGACCA
CCGTGATTACAAGGCATGGGTCATTCCTGTTGACATGAGGAAAAGGCTCATACATGAACCAGCTGTTTTTGAGGGTGCTC
CGCGTACTCTTGGCATAGGTTCCACCTTCATACAAACCACCATCTCCAACTATCCACAACCTGCTCCNNGGTAAAAAGAG
AAAACAGAAACAGCCTGGGATGTTGCTGGGATCCTCAAGCAAAAGGAAGTCCGAAACTCCCTATTTGACAAATGTGGTGC
TGCCACTGCCAACGAGGCACGGTGTGCAAAAACAACCGGATGCGGAAGGAGGTAGCATGGAAGCTGAATTTTCAGATAAT
ATGTTATTATAATAAGCTGGGATATGAGTAATAGTGGTAATTATCATATTTTATTGATATAGTGTGATCCCGTATCAAGA
CTATGATCCCTCGGTTATTCTCTCCTATGTNGTGCTTGTATGTGTAAGGGACGACCTGAATGAACTCAGTTCAGACATTT
TTCTGTCCTATCTATGTGGTACACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12214.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis