Browse Element(s) Details


Os.12242.1.S1_at

Description gb:AK102546.1
DB_XREF= gi:32987755
TID=Os.12242.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12242 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033096N21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033096N21, full insert sequence.
FL= gb:AK102546.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3914011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g39110Os.9357.1.S1_at11/115+22849528..22852649selT/selW/selH selenoprotein domain containing protein, expressed
LOC_Os05g39120Os.57399.1.S1_at11/115+22854120..22857464expressed protein
LOC_Os05g39130OsAffx.25007.2.S1_at1/115+22862782..22869989retrotransposon protein, putative, unclassified
LOC_Os05g39140Os.12242.1.S1_at11/115+22872129..22877626expressed protein
LOC_Os05g39140Os.48582.1.A1_s_at10/115+22872129..22877626expressed protein
LOC_Os05g39150Os.51909.1.S1_at11/115+22878075..22881251expressed protein
LOC_Os05g39160OsAffx.27234.2.S1_at11/115+22882724..22883992hypothetical protein
LOC_Os05g39170OsAffx.27234.1.S1_at11/115+22887046..22888595hypothetical protein
LOC_Os05g39180Os.50520.1.S1_at11/115+22891311..22894850expressed protein
LOC_Os05g39190Os.54521.1.S1_at11/115+22895418..22898968expressed protein
LOC_Os05g39200OsAffx.15023.1.S1_at10/115+22900867..22903188hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12242.1.S1_at--384--6411Chr05:22872695..22872719 (25 bp)
GATCTGGGCAGCACATCTGAAGCTT
LOC_Os05g39140
Os.12242.1.S1_at--975--4051Chr05:22872642..22872666 (25 bp)
CGAGGATTCCATGACGCTTTACAAG
LOC_Os05g39140
Os.12242.1.S1_at--874--5631Chr05:22872607..22872631 (25 bp)
GACAGCATACCAAGTTTACAGCCGT
LOC_Os05g39140
Os.12242.1.S1_at--828--3371Chr05:22872589..22872613 (25 bp)
CAGCCGTTGTAATTGTTCCTTTAGA
LOC_Os05g39140
Os.12242.1.S1_at--35--5111Chr05:22872538..22872562 (25 bp)
GCACGTATGGTTCGTCTCATTTTGA
LOC_Os05g39140
Os.12242.1.S1_at--42--8231Chr05:22872512..22872536 (25 bp)
GGCAATATTGCTGTGCCTGTATTAA
LOC_Os05g39140
Os.12242.1.S1_at--1120--1771Chr05:22872468..22872492 (25 bp)
ACCGTTTTGGTTTCAGTTGGCAGAG
LOC_Os05g39140
Os.12242.1.S1_at--745--2731Chr05:22872428..22872452 (25 bp)
AAGAATCTGCCTAGAGCTTGCCTGG
LOC_Os05g39140
Os.12242.1.S1_at--1144--9111Chr05:22872410..22872434 (25 bp)
TGCCTGGAGGTCACGTTTTCTACGA
LOC_Os05g39140
Os.12242.1.S1_at--250--9531Chr05:22872326..22872350 (25 bp)
TCTAGAGCATTTCGTTTTCCTGGGC
LOC_Os05g39140
Os.12242.1.S1_at--481--511Chr05:22872220..22872244 (25 bp)
ATCGTCAGTTTCTTTCGCTGTGATA
LOC_Os05g39140
Target Sequence 
GATCTGGGCAGCACATCTGAAGCTTATGATATTTTGCTTGTAGCATTTTCAGGCGAGGATTCCATGACGCTTTACAAGGA
CCGTGTTGGACAGCATACCAAGTTTACAGCCGTTGTAATTGTTCCTTTAGACGAGTTGTTACATATCAAAGCATTTGGCA
CGTATGGTTCGTCTCATTTTGATGGCAATATTGCTGTGCCTGTATTAAAGCATGGAAGCTGTAAGAAACCGTTTTGGTTT
CAGTTGGCAGAGAAGAAGTCGGGGCATAAGAATCTGCCTAGAGCTTGCCTGGAGGTCACGTTTTCTACGATGGGTTACTA
TAACACGGGAGAGATGTAGAACAAATGACTGCAAGAACTGCTATTTTGCTCTAGAGCATTTCGTTTTCCTGGGCTGTGAA
ATGTTTAAGAGTTGTGATTTGATACTGAAATCCGTAAGTTGTATTTTAACTGAAATCGATAATGATGTTTTATCGATCGT
CAGTTTCTTTCGCTGTGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12242.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis