Browse Element(s) Details


Os.12243.1.S1_at

Description gb:AK065664.1
DB_XREF= gi:32975682
TID=Os.12243.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12243 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013039L03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013039L03, full insert sequence.
FL= gb:AK065664.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5992011/11cysteine synthase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g59860Os.13245.1.S1_x_at11/111+34947082..34950777expressed protein
LOC_Os01g59870Os.13246.1.S1_at11/111+34953033..34955450Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os01g59880Os.53066.1.S1_at11/111+34959817..34962018expressed protein
LOC_Os01g59880Os.53066.1.S1_x_at11/111+34959817..34962018expressed protein
LOC_Os01g59890Os.25241.1.S1_at10/111+34963004..34966495expressed protein
LOC_Os01g59900Os.8824.1.S1_at11/111+34966593..34969643expressed protein
LOC_Os01g59910Os.27162.1.A1_at11/111+34970111..34973135F-box domain containing protein, expressed
LOC_Os01g59910Os.27162.1.A1_s_at11/111+34970111..34973135F-box domain containing protein, expressed
LOC_Os01g59910OsAffx.23861.1.S1_at11/111+34970111..34973135F-box domain containing protein, expressed
LOC_Os01g59920Os.12243.1.S1_at11/111+34973955..34977620cysteine synthase, chloroplast precursor, putative, expressed
LOC_Os01g59930Os.12219.1.S1_at10/111+34978925..34982302oxidoreductase, FAD-binding family protein, expressed
LOC_Os01g59940OsAffx.23862.1.S1_at11/111+34985578..34986219hypothetical protein
LOC_Os01g59950Os.48290.1.A1_at4/111+34990847..34991751expressed protein
LOC_Os01g59970Os.4633.1.S1_at5/111+35001691..35002854expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006535biological_processcysteine biosynthesis from serine
GO:0019344biological_processcysteine biosynthesis
GO:0005739cellular_componentmitochondrion
GO:0005829cellular_componentcytosol
GO:0009536cellular_componentplastid
GO:0004124molecular_functioncysteine synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12243.1.S1_at--1102--171Chr01:34974635..34974659 (25 bp)
ATTTCGTCAGGTGCTGCCACAGTTG
LOC_Os01g59920
Os.12243.1.S1_at--1133--3151Chr01:34974459..34974595 (25 bp)
AATTGATTGCGGTTATTTTCCCCAG
LOC_Os01g59920
Os.12243.1.S1_at--881--9531Chr01:34974415..34974439 (25 bp)
TCTAGCATTTTATTCCGTCCGATAT
LOC_Os01g59920
Os.12243.1.S1_at--1003--6011Chr01:34974365..34974389 (25 bp)
GAGATAACTAACTTCTGCCACTCCA
LOC_Os01g59920
Os.12243.1.S1_at--729--9831Chr01:34974317..34974341 (25 bp)
TAAACCTAACATACTTCCACGGCAT
LOC_Os01g59920
Os.12243.1.S1_at--833--9871Chr01:34974306..34974330 (25 bp)
TACTTCCACGGCATAACAGATTTTG
LOC_Os01g59920
Os.12243.1.S1_at--659--5591Chr01:34974242..34974266 (25 bp)
GAAATTTTGAAACGCCATAGGCACT
LOC_Os01g59920
Os.12243.1.S1_at--406--8751Chr01:34974116..34974140 (25 bp)
TGTAAATCATCTGCACCAAAGCGTC
LOC_Os01g59920
Os.12243.1.S1_at--707--3711Chr01:34974042..34974066 (25 bp)
CTAGCATAGTAGGATCTTTCTTCAA
LOC_Os01g59920
Os.12243.1.S1_at--540--771Chr01:34973985..34974009 (25 bp)
ATGTGATATACCTTTTGAGCTGATC
LOC_Os01g59920
Os.12243.1.S1_at--670--8911Chr01:34973970..34973994 (25 bp)
TGAGCTGATCTTGTTGACTTATTGA
LOC_Os01g59920
Target Sequence 
ATTTCGTCAGGTGCTGCCACAGTTGCTGCTATTAACGTCGCTNAAAGACCTGAAAATGCTGGAAAATTGATTGCGGTTAT
TTTCCCCAGCTTTGGAGAAAGATATATCTCTAGCATTTTATTCCGTCCGATATATGACTCGGTCCGAAGAATGAGGAAGA
GATAACTAACTTCTGCCACTCCAGGAAGAAGAAGGTTGCCAGTTCTTAAACCTAACATACTTCCACGGCATAACAGATTT
TGAAGGGTGAGGTTCCAGGTAGATTACAACGAGNAGTGCCTGAAATTTTGAAACGCCATAGGCACTGGNCAGCCTCACAG
AAGGTTGAAATTGCGCACGGTTGCTGACGAGTAGTTTGCAAGCCTGCAATTTGGTTCCAGGGAATCGTGTCCAAAACTAT
TCATAACTGTAAATCATCTGCACCAAAGCGTCTGGAACCAGACCACATCCACGATGGAATNTGTNGAATTAGATATTGCA
GCTAGCATAGTAGGATCTTTCTTCAATAGTTTAGGCTTGGTAATGGAACAGATCTGTAATGTGATATACCTTTTGAGCTG
ATCTTGTTGACTTATTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12243.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis