Browse Element(s) Details


Os.12273.1.S1_at

Description gb:AK120932.1
DB_XREF= gi:37990555
TID=Os.12273.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12273 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023036D13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023036D13, full insert sequence.
FL= gb:AK120932.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5727011/11expressed protein
LOC_Os04g572601/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g57200Os.7115.1.S1_a_at11/114+33861558..33862845heavy metal-associated domain containing protein, expressed
LOC_Os04g57210Os.9650.1.A1_at11/114+33864372..33868483Actin family protein, expressed
LOC_Os04g57220Os.22723.1.S1_a_at11/114+33868683..33871611Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os04g57220Os.22723.3.S1_x_at5/114+33868683..33871611Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os04g57230Os.20204.4.S1_at11/114+33872604..33876347regulatory protein RecX containing protein, expressed
LOC_Os04g57230Os.5935.1.S1_at11/114+33872604..33876347regulatory protein RecX containing protein, expressed
LOC_Os04g57240Os.51414.1.S1_at4/114+33876674..33877784hypothetical protein
LOC_Os04g57250OsAffx.23181.1.S1_x_at11/114+33879770..33880396hypothetical protein
LOC_Os04g57260Os.12273.1.S1_at1/114+33882989..33883390expressed protein
LOC_Os04g57270Os.12273.1.S1_at11/114+33885403..33885908expressed protein
LOC_Os04g57280Os.12275.1.S1_at11/114+33887578..33888100expressed protein
LOC_Os04g57290Os.27287.1.S1_at11/114+33891420..33893101F-box domain containing protein, expressed
LOC_Os04g57300Os.38230.1.S1_at11/114+33895065..33897846phosphatidylinositol 3- and 4-kinase family protein, putative, expressed
LOC_Os04g57310Os.15283.1.S1_at11/114+33900474..33904540Uncharacterized conserved protein, putative, expressed
LOC_Os04g57320Os.25587.1.S1_s_at10/114+33903833..33906854Immutans protein, putative, expressed
LOC_Os04g57320Os.25587.1.S1_at9/114+33903833..33906854Immutans protein, putative, expressed
LOC_Os04g57320Os.25587.3.S1_x_at6/114+33903833..33906854Immutans protein, putative, expressed
LOC_Os04g57330Os.13987.1.S1_at11/114+33908934..33912073expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12273.1.S1_at--547--6711Chr04:33885743..33885767 (25 bp)
GTTCGCAGAAGCCTCGACAGTGAGT
LOC_Os04g57270
Os.12273.1.S1_at--245--1451Chr04:33885737..33885761 (25 bp)
AGAAGCCTCGACAGTGAGTGCCGCC
LOC_Os04g57270
Os.12273.1.S1_at--511--8891Chr04:33885723..33885747 (25 bp)
TGAGTGCCGCCTCCAGGGTATTGTT
LOC_Os04g57270
Os.12273.1.S1_at--1033--1491Chr04:33885628..33885652 (25 bp)
AGCACATCTGCCGAGTCTCCAAGTG
LOC_Os04g57270
Os.12273.1.S1_at--61--6112Chr04:33885616..33885640 (25 bp)
GAGTCTCCAAGTGCTGATGCCTGAA
LOC_Os04g57270
Os.12273.1.S1_at--62--2871Chr04:33885608..33885632 (25 bp)
AAGTGCTGATGCCTGAATGAGTAAG
LOC_Os04g57270
Os.12273.1.S1_at--447--2851Chr04:33885573..33885597 (25 bp)
AAGTGAATGATTCCTAATACCTGGA
LOC_Os04g57270
Os.12273.1.S1_at--108--3071Chr04:33885558..33885582 (25 bp)
AATACCTGGAATATTGACCAAACAT
LOC_Os04g57270
Os.12273.1.S1_at--894--251Chr04:33885531..33885555 (25 bp)
ATATGCCAGACATCCTTTGTTAAGG
LOC_Os04g57270
Os.12273.1.S1_at--6--10411Chr04:33885478..33885502 (25 bp)
TTTTGTTTATCACTACCTCTACCTA
LOC_Os04g57270
Os.12273.1.S1_at--1037--3711Chr04:33885466..33885490 (25 bp)
CTACCTCTACCTATGTTGTTGATTG
LOC_Os04g57270
Target Sequence 
GTTCGCAGAAGCCTCGACAGTGAGTGCCGCCTCCAGGGTATTGTTGGCCTCCGAAGCGCCCGCTGAGAGCCCGGCTGGGC
CTGCGCCGGCCCCAGGCCCAACGGAAGAGTCCAGCAGCACATCTGCCGAGTCTCCAAGTGCTGATGCCTGAATGAGTAAG
AGTGAAGCTCAAGTGAATGATTCCTAATACCTGGAATATTGACCAAACATATATATGCCAGACATCCTTTGTTAAGGCTA
ACATAGCCTCATTTTTTTTATTTTTTTTTGTTTATCACTACCTCTACCTATGTTGTTGATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12273.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis