Browse Element(s) Details


Os.12275.1.S1_at

Description gb:AK107558.1
DB_XREF= gi:32992767
TID=Os.12275.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.12275 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-130-B06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-130-B06, full insert sequence.
FL= gb:AK107558.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5728011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g57200Os.7115.1.S1_a_at11/114+33861558..33862845heavy metal-associated domain containing protein, expressed
LOC_Os04g57210Os.9650.1.A1_at11/114+33864372..33868483Actin family protein, expressed
LOC_Os04g57220Os.22723.1.S1_a_at11/114+33868683..33871611Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os04g57220Os.22723.3.S1_x_at5/114+33868683..33871611Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os04g57230Os.20204.4.S1_at11/114+33872604..33876347regulatory protein RecX containing protein, expressed
LOC_Os04g57230Os.5935.1.S1_at11/114+33872604..33876347regulatory protein RecX containing protein, expressed
LOC_Os04g57240Os.51414.1.S1_at4/114+33876674..33877784hypothetical protein
LOC_Os04g57250OsAffx.23181.1.S1_x_at11/114+33879770..33880396hypothetical protein
LOC_Os04g57260Os.12273.1.S1_at1/114+33882989..33883390expressed protein
LOC_Os04g57270Os.12273.1.S1_at11/114+33885403..33885908expressed protein
LOC_Os04g57280Os.12275.1.S1_at11/114+33887578..33888100expressed protein
LOC_Os04g57290Os.27287.1.S1_at11/114+33891420..33893101F-box domain containing protein, expressed
LOC_Os04g57300Os.38230.1.S1_at11/114+33895065..33897846phosphatidylinositol 3- and 4-kinase family protein, putative, expressed
LOC_Os04g57310Os.15283.1.S1_at11/114+33900474..33904540Uncharacterized conserved protein, putative, expressed
LOC_Os04g57320Os.25587.1.S1_s_at10/114+33903833..33906854Immutans protein, putative, expressed
LOC_Os04g57320Os.25587.1.S1_at9/114+33903833..33906854Immutans protein, putative, expressed
LOC_Os04g57320Os.25587.3.S1_x_at6/114+33903833..33906854Immutans protein, putative, expressed
LOC_Os04g57330Os.13987.1.S1_at11/114+33908934..33912073expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12275.1.S1_at--394--531Chr04:33888043..33888067 (25 bp)
ATCGCATCAACCACCAAATCGAAGG
LOC_Os04g57280
Os.12275.1.S1_at--119--531Chr04:33888026..33888050 (25 bp)
ATCGAAGGCACGTAGGTGAGCACCA
LOC_Os04g57280
Os.12275.1.S1_at--54--7771Chr04:33888012..33888036 (25 bp)
GGTGAGCACCAACAGCTACATCGGC
LOC_Os04g57280
Os.12275.1.S1_at--1075--10131Chr04:33887945..33887969 (25 bp)
TATCGCAGTGGCACCGTTCGCGGAA
LOC_Os04g57280
Os.12275.1.S1_at--277--8171Chr04:33887924..33887948 (25 bp)
GGAAGCCTCGACAGTCACCGGTGGC
LOC_Os04g57280
Os.12275.1.S1_at--97--6111Chr04:33887824..33887848 (25 bp)
GAGTCCAGCAGTGAATCTGCTCCAT
LOC_Os04g57280
Os.12275.1.S1_at--95--4531Chr04:33887791..33887815 (25 bp)
GCCGCTGATGCCTGATCGAGTAATA
LOC_Os04g57280
Os.12275.1.S1_at--673--3211Chr04:33887758..33887782 (25 bp)
CAAGTGAATAATTCTTCATCCCAAG
LOC_Os04g57280
Os.12275.1.S1_at--935--351Chr04:33887726..33887750 (25 bp)
ATCAAGCATATATGTCCTACCCTTC
LOC_Os04g57280
Os.12275.1.S1_at--506--9231Chr04:33887712..33887736 (25 bp)
TCCTACCCTTCCTTCATAAAGGCTA
LOC_Os04g57280
Os.12275.1.S1_at--446--4891Chr04:33887649..33887673 (25 bp)
GCTTTCTTCTGTTGATTGATCGTGT
LOC_Os04g57280
Target Sequence 
ATCGCATCAACCACCAAATCGAAGGCACGTAGGTGAGCACCAACAGCTACATCGGCCATGGCTCGCGCGCTCGTTCTCGT
CGTGATCCTCCTCGCCGCTATCGCAGTGGCACCGTTCGCGGAAGCCTCGACAGTCACCGGTGGCTCCAGGGTATTGTTGG
CCTCCGACGCGCCCGCTGAGAGCCCGGCTGGGCCTGCGGCGGCCCCAGGCCCAGCGGAAGAGTCCAGCAGTGAATCTGCT
CCATCTCCGAGCGCCGCTGATGCCTGATCGAGTAATAATGAAGTCCAAGTGAATAATTCTTCATCCCAAGAACATTGATC
AAGCATATATGTCCTACCCTTCCTTCATAAAGGCTAACAGAGCCTCATTTTTATTTTNATTTTNATTTTTNATTGCTTTC
TTCTGTTGATTGATCGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12275.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis