Browse Element(s) Details


Os.12318.1.S1_at

Description gb:AK111113.1
DB_XREF= gi:32996322
TID=Os.12318.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12318 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-176-B02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-176-B02, full insert sequence.
FL= gb:AK111113.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0760011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g07550Os.5300.1.S1_at9/118+4236865..4237329hAT dimerisation domain-containing protein, putative
LOC_Os08g07560Os.47130.4.A1_x_at3/118+4241850..4246651retrotransposon protein, putative, unclassified
LOC_Os08g07570OsAffx.32166.1548.S1_s_at11/118+4248177..4249987retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g07580OsAffx.29083.1.S1_at11/118+4251270..4252139hypothetical protein
LOC_Os08g07590OsAffx.16879.1.S1_at9/118+4257539..4258633hypothetical protein
LOC_Os08g07600Os.12318.1.S1_at11/118+4261939..4262602expressed protein
LOC_Os08g07610Os.41248.4.S1_x_at2/118+4263872..4268637retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g07620OsAffx.5738.1.S1_at11/118+4272015..4272344hypothetical protein
LOC_Os08g07630OsAffx.29084.2.S1_x_at11/118+4277482..4277988expressed protein
LOC_Os08g07640NANA8+4280063..4280476hypothetical protein
LOC_Os08g07650OsAffx.29085.1.S1_at11/118+4282901..4283271hypothetical protein
LOC_Os08g07660OsAffx.29084.2.S1_x_at1/118+4284192..4284740hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12318.1.S1_at--779--9231Chr08:4262039..4262063 (25 bp)
TCCATCGCCGGAGATTATATCGAAC
LOC_Os08g07600
Os.12318.1.S1_at--245--952Chr08:4262204..4262228 (25 bp)
AGGAAGAAGCAGCACCATGCGCCGT
LOC_Os08g07600
Os.12318.1.S1_at--207--9731Chr08:4262228..4262252 (25 bp)
TCAATGGCCGGAGTACGATCCTTGC
LOC_Os08g07600
Os.12318.1.S1_at--839--711Chr08:4262261..4262285 (25 bp)
ATGATTCCAAGCCAACGCGGCCTGG
LOC_Os08g07600
Os.12318.1.S1_at--101--10571Chr08:4262337..4262361 (25 bp)
TTCTTCCTGATCCATCGCATCGTCT
LOC_Os08g07600
Os.12318.1.S1_at--426--9511Chr08:4262359..4262383 (25 bp)
TCTCGTCTCTGCTGTTGATGGTAGA
LOC_Os08g07600
Os.12318.1.S1_at--339--5991Chr08:4262382..4262406 (25 bp)
GAGACTAGAGAGCTATCTATCTTGG
LOC_Os08g07600
Os.12318.1.S1_at--733--10491Chr08:4262427..4262451 (25 bp)
TTAACTGGCATGATCCATTGGAGGA
LOC_Os08g07600
Os.12318.1.S1_at--422--8011Chr08:4262446..4262470 (25 bp)
GGAGGAGAGGGATCAACAGCTAAAT
LOC_Os08g07600
Os.12318.1.S1_at--94--10191Chr08:4262555..4262579 (25 bp)
TATATTGGTGTAGCTTCCACGGCCT
LOC_Os08g07600
Os.12318.1.S1_at--520--3631Chr08:4262568..4262592 (25 bp)
CTTCCACGGCCTGGTGAATGTTGAT
LOC_Os08g07600
Target Sequence 
TCCATCGCCGGAGATTATATCGAACAATGGCGATGTCGTCGTCTCCCGCCTCGCCGCCGCCATCCTTCCTGATCGGCGGC
GCCCAGGCCCAGCTCCTGCGCCACCGGGAGGAAATGCTGCTTGTTCTTCCCTCCCCTCCCTCCGGCCGGCAGCTGCCATC
GGAGGAGGAAGAAGCAGCACCATGCGCCGTCAATGGCCGGAGTACGATCCTTGCCGCCGCCGATGATTCCAAGCCAACGC
GGCCTGGAGCGCCGGCGGAGGGNTCCGGCGGCAACGGCGGAGCAATCCACACCGCTGCTTCTTCCTGATCCATCGCATCG
TCTCGTCTCTGCTGTTGATGGTAGAGACTAGAGAGCTATCTATCTTGGAAGAGATGATAACTCAATAATTAACTGGCATG
ATCCATTGGAGGAGAGGGATCAACAGCTAAATAATTAAGCATATTTGAGATACATTAGACAGAAATTCAGAAAAAGATTC
TGAATTCTACAATCGGAAGAGAAATAAAGCTGAAACTATATTGGTGTAGCTTCCACGGCCTGGTGAATGTTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12318.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis