Browse Element(s) Details


Os.12353.1.S1_at

Description gb:AK120721.1
DB_XREF= gi:37990344
TID=Os.12353.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12353 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023002G14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023002G14, full insert sequence.
FL= gb:AK120721.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1408011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g14030OsAffx.19660.1.S1_at11/1112+7966295..7966555hypothetical protein
LOC_Os12g14040NANA12+7969204..7969680retrotransposon protein, putative, unclassified
LOC_Os12g14050NANA12+7970017..7973194hypothetical protein
LOC_Os12g14060NANA12+7977265..7977936retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g14070Os.7977.1.S1_at11/1112+7983582..7989353Stromal 70 kDa heat shock-related protein, chloroplast precursor, putative, expressed
LOC_Os12g14080Os.12353.1.S1_at11/1112+7990304..7992128expressed protein
LOC_Os12g14090OsAffx.19661.1.S1_at11/1112+7992805..7994128hypothetical protein
LOC_Os12g14100Os.52989.1.S1_at11/1112+7994789..7997771lysine and histidine specific transporter, putative, expressed
LOC_Os12g14110Os.5749.1.S1_at11/1112+7997904..8001880expressed protein
LOC_Os12g14120Os.27639.1.S1_x_at1/1112+8009233..8012987retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12353.1.S1_at--600--3731Chr12:7990784..7990808 (25 bp)
CTAAAACCCCTGTGCTCAGCAAAGA
LOC_Os12g14080
Os.12353.1.S1_at--16--8851Chr12:7990711..7990735 (25 bp)
TGATCCGAAACTCCAGCCAGATTCT
LOC_Os12g14080
Os.12353.1.S1_at--787--5231Chr12:7990686..7990710 (25 bp)
GAATACCCTGAGTGGCTGTGGCACC
LOC_Os12g14080
Os.12353.1.S1_at--711--2211Chr12:7990655..7990679 (25 bp)
ACAAGCGCCCTATGCTGAGTGAGCT
LOC_Os12g14080
Os.12353.1.S1_at--828--931Chr12:7990626..7990650 (25 bp)
AGGAAAGATGCCAAGACGCTCCCCT
LOC_Os12g14080
Os.12353.1.S1_at--697--5791Chr12:7990612..7990636 (25 bp)
GACGCTCCCCTATGAAGACCTGAAA
LOC_Os12g14080
Os.12353.1.S1_at--939--5811Chr12:7990596..7990620 (25 bp)
GACCTGAAACGGTTCGTCAAGCTGG
LOC_Os12g14080
Os.12353.1.S1_at--1067--3231Chr12:7990579..7990603 (25 bp)
CAAGCTGGTGAACCGAGCTCGGATC
LOC_Os12g14080
Os.12353.1.S1_at--414--5251Chr12:7990546..7990570 (25 bp)
GAATGCCCTCACTGCAAAGAACTGA
LOC_Os12g14080
Os.12353.1.S1_at--214--1971Chr12:7990526..7990550 (25 bp)
ACTGATCTGGATACTCTCTGGAGGT
LOC_Os12g14080
Os.12353.1.S1_at--1151--9751Chr12:7990410..7990434 (25 bp)
TAAGAGATGCTTCCTAATTTTTGTT
LOC_Os12g14080
Target Sequence 
CTAAAACCCCTGTGCTCAGCAAAGAACTTAAGAGTACAACAGTGTTTGGGGCAAATATCCTCAAGGAGGGGTCTGATCCG
AAACTCCAGCCAGATTCTGAATACCCTGAGTGGCTGTGGCACCTGCTCGACAAGCGCCCTATGCTGAGTGAGCTGCGGAG
GAAAGATGCCAAGACGCTCCCCTATGAAGACCTGAAACGGTTCGTCAAGCTGGTGAACCGAGCTCGGATCAAGGAGCAGA
ATGCCCTCACTGCAAAGAACTGATCTGGATACTCTCTGGAGGTTCCATCATCTGTTTTTCACTACATGATTTACTGTTGA
AATATGCTAAGCTGTGCACTGTAATAATGTAGTGACCTGGAACATTAGAATATTTAAGAGATGCTTCCTAATTTTTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12353.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis