Browse Element(s) Details


Os.12358.1.S1_at

Description gb:AK122143.1
DB_XREF= gi:37991789
TID=Os.12358.1
CNT=94
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12358 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-023-H09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033136J20, full insert sequence.
FL= gb:AK059192.1 gb:AK122143.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1857011/1140S ribosomal protein S7, putative, expressed
LOC_Os03g185802/1140S ribosomal protein S7, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g18500Os.24774.1.S1_at11/113+10347920..10351635Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed
LOC_Os03g18510Os.11646.1.S1_at10/113+10351843..10355069Eukaryotic translation initiation factor 2 alpha subunit family protein, expressed
LOC_Os03g18510Os.9230.1.S1_x_at1/113+10351843..10355069Eukaryotic translation initiation factor 2 alpha subunit family protein, expressed
LOC_Os03g18520NANA3+10355716..10358422Glycosyl hydrolases family 17 protein, expressed
LOC_Os03g18530Os.56051.1.S1_at11/113+10359121..10359795ECA1 protein, putative, expressed
LOC_Os03g18540Os.18166.1.S1_at11/113+10360389..10366633expressed protein
LOC_Os03g18540Os.18166.1.S2_at11/113+10360389..10366633expressed protein
LOC_Os03g18540Os.51413.1.S1_at1/113+10360389..10366633expressed protein
LOC_Os03g18550Os.15618.1.S1_a_at11/113+10367022..10369954Mitochondrial carrier protein, expressed
LOC_Os03g18560Os.11237.1.S1_at10/113+10370703..10371797expressed protein
LOC_Os03g18570Os.12358.1.S1_at11/113+10372685..1037486040S ribosomal protein S7, putative, expressed
LOC_Os03g18570Os.37025.1.S1_at1/113+10372685..1037486040S ribosomal protein S7, putative, expressed
LOC_Os03g18580Os.37025.1.S1_at11/113+10376940..1037921540S ribosomal protein S7, putative, expressed
LOC_Os03g18580Os.12358.1.S1_at2/113+10376940..1037921540S ribosomal protein S7, putative, expressed
LOC_Os03g18590Os.7592.1.S1_at11/113+10379825..10383326malonyl CoA-acyl carrier protein transacylase containing protein, expressed
LOC_Os03g18600Os.55612.1.S1_at9/113+10397692..10398864Streptomyces cyclase/dehydrase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005843cellular_componentcytosolic small ribosomal subunit (sensu Eukaryota)
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12358.1.S1_at--1158--5312Chr03:10378291..10378315 (25 bp)
GAAGGGCTCGGCTGTTCAGCGCCCT
LOC_Os03g18580
Os.12358.1.S1_at--468--8792Chr03:10378303..10378327 (25 bp)
TGTTCAGCGCCCTCGCACAAGAACT
LOC_Os03g18580
Os.12358.1.S1_at--398--7511Chr03:10374728..10374752 (25 bp)
GTGGAATTAGTTTTCACTTATGTGG
LOC_Os03g18570
Os.12358.1.S1_at--710--10371Chr03:10374789..10374813 (25 bp)
TTTTTTGCTCCAGCTACTCGTTATC
LOC_Os03g18570
Os.12358.1.S1_at--104--9111Chr03:10374794..10374818 (25 bp)
TGCTCCAGCTACTCGTTATCTGTTA
LOC_Os03g18570
Os.12358.1.S1_at--211--1231Chr03:10374800..10374824 (25 bp)
AGCTACTCGTTATCTGTTACCTTAG
LOC_Os03g18570
Os.12358.1.S1_at--59--491Chr03:10374811..10374835 (25 bp)
ATCTGTTACCTTAGTCATTTAATCG
LOC_Os03g18570
Os.12358.1.S1_at--667--6751Chr03:10374815..10374839 (25 bp)
GTTACCTTAGTCATTTAATCGTTGT
LOC_Os03g18570
Os.12358.1.S1_at--486--9751Chr03:10374830..10374854 (25 bp)
TAATCGTTGTTTTGTTGGGCCTCCT
LOC_Os03g18570
Os.12358.1.S1_at--884--511Chr03:10374832..10374856 (25 bp)
ATCGTTGTTTTGTTGGGCCTCCTGC
LOC_Os03g18570
Os.12358.1.S1_at--458--4031Chr03:10374834..10374858 (25 bp)
CGTTGTTTTGTTGGGCCTCCTGCTT
LOC_Os03g18570
Target Sequence 
GAAGGGCTCGGCTGTTCAGCGCCCTCGCACAAGAACTCTTACTGCTGTTCATGATGGTATCTTGGAGGATGTAGTCTACC
CAGCTGAGATTGTTGGCAAGCGCATCAGATACCGTCTGGATGGTGCCAAGGTCATCAAGATTTTCTTGGACCCAAAGGAG
CGCAACAATACCGAATACAAGCTCGAGACCTTCTCCGCGGTCTACCGCAGGCTTTGTGGGAAAGATGTTGCCTTTGAGTA
CCCTATGACTGAAACTGCTTGAAGATGCATTCCTTGGATTGTTCCCAATGTATTCCAGAAATCATAGTTTTGATGCCAAA
GTTGGTACTTGGGTATTTGTTACTTTGAGACGACAAATCGACTTGAACAATGTTAAAGTTTTGGGCATTTAAATTATAGA
CCTTTGCTTTGGCACGGTTAGNCTTGTTTCAATCCATTGTTTNGTTGTGGAATTAGTTTTCACTTATGTGGTAGNGGGAA
GAATCTCATTATGACCGCCTANNNTCATTTTTTTTGCTCCAGCTACTCGTTATCTGTTACCTTAGTCATTTAATCGTTGT
TTTGTTGGGCCTCCTGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12358.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis