Browse Element(s) Details


Os.1236.1.S1_at

Description gb:CF308803
DB_XREF= gi:33680564
DB_XREF=ABF--02-M04.b1
CLONE=ABF--02-M04
TID=Os.1236.1
CNT=14
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.1236 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative coatmer beta subunit (beta-coat protein) (beta-COP) (OSJNBa0036E02.23), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1743011/11Adaptin N terminal region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g17370OsAffx.7292.1.S1_at1/111+9994366..9996904retrotransposon protein, putative, unclassified
LOC_Os01g17370OsAffx.7292.1.S1_x_at1/111+9994366..9996904retrotransposon protein, putative, unclassified
LOC_Os01g17380Os.47130.4.A1_x_at2/111+9997844..9998170retrotransposon protein, putative, unclassified
LOC_Os01g17390Os.286.1.S1_a_at11/111+10000730..10004531F-box family protein, putative, expressed
LOC_Os01g17396Os.27387.1.S1_at11/111+10004835..10008373expressed protein
LOC_Os01g17396Os.27387.1.S1_x_at11/111+10004835..10008373expressed protein
LOC_Os01g17396Os.27387.2.S1_x_at11/111+10004835..10008373expressed protein
LOC_Os01g17396Os.27387.2.S1_at11/111+10004835..10008373expressed protein
LOC_Os01g17402Os.31518.1.S1_at11/111+10008653..10012233Cyclin, N-terminal domain containing protein, expressed
LOC_Os01g17402Os.31518.2.S1_x_at10/111+10008653..10012233Cyclin, N-terminal domain containing protein, expressed
LOC_Os01g17410OsAffx.11090.1.S1_at11/111+10013004..10013216hypothetical protein
LOC_Os01g17420NANA1+10015530..10017154hypothetical protein
LOC_Os01g17430Os.1236.1.S1_at11/111+10018208..10023767Adaptin N terminal region family protein, expressed
LOC_Os01g17440Os.47130.4.A1_x_at3/111+10025332..10027790retrotransposon protein, putative, unclassified
LOC_Os01g17440Os.27455.2.S1_at1/111+10025332..10027790retrotransposon protein, putative, unclassified
LOC_Os01g17450Os.28943.1.S1_x_at4/111+10028759..10032001retrotransposon protein, putative, unclassified
LOC_Os01g17460NANA1+10032622..10038585retrotransposon protein, putative, unclassified
LOC_Os01g17470Os.36802.1.S1_at11/111+10045051..10047087Plastocyanin-like domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0030276molecular_functionclathrin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1236.1.S1_at--212--8231Chr01:10018713..10018737 (25 bp)
GGCAAGCTCAGTGGTTACATCAGAA
LOC_Os01g17430
Os.1236.1.S1_at--305--4351Chr01:10018675..10018699 (25 bp)
CCAGGGAATCGCACTCAGCTTAGGA
LOC_Os01g17430
Os.1236.1.S1_at--680--971Chr01:10018654..10018678 (25 bp)
AGGAGACAAGATTACCCTCAAGCAG
LOC_Os01g17430
Os.1236.1.S1_at--627--5711Chr01:10018607..10018631 (25 bp)
GACTCTGTCACGGTTGTATCATCAT
LOC_Os01g17430
Os.1236.1.S1_at--173--5951Chr01:10018503..10018527 (25 bp)
GAGAACCGGGATGATGTTCCCAGTT
LOC_Os01g17430
Os.1236.1.S1_at--858--6691Chr01:10018488..10018512 (25 bp)
GTTCCCAGTTGGATAATGCTCCAGA
LOC_Os01g17430
Os.1236.1.S1_at--903--1211Chr01:10018440..10018464 (25 bp)
AGTTCAATCCGGATTTGCCTCCTGT
LOC_Os01g17430
Os.1236.1.S1_at--449--3811Chr01:10018422..10018446 (25 bp)
CTCCTGTCCCTGTTATTGGAGTGTT
LOC_Os01g17430
Os.1236.1.S1_at--660--3151Chr01:10018321..10018345 (25 bp)
AATTGTGGCCTTTGTGTTACGACCG
LOC_Os01g17430
Os.1236.1.S1_at--937--4451Chr01:10018297..10018321 (25 bp)
GCCTACCTTGTCTTGTGTTTATTTG
LOC_Os01g17430
Os.1236.1.S1_at--631--6151Chr01:10018253..10018277 (25 bp)
GAGGTATATCGCACATTCACACTTA
LOC_Os01g17430
Target Sequence 
GGCAAGCTCAGTGGTTACATCAGAATAAGGANCAAGACCCAGGGAATCGCACTCAGCTTAGGAGACAAGATTACCCTCAA
GCAGAAGGGAGGCAGTTAACTGCCATGACTCTGTCACGGTTGTATCATCATTTTTAGTAAATTCCACGCTTTAGTGGGAT
TGAATTGTTGAGTAAAGTTCTTTTTTGTACAAAAGATCAAAGAAAGGAAAGAGAACCGGGATGATGTTCCCAGTTGGATA
ATGCTCCAGAGCTATTGAAGGACGACAAGGTTTAGTTCAATCCGGATTTGCCTCCTGTCCCTGTTATTGGAGTGTTNAGT
CTTTTTGATAAAAAGAAATGACGATGTAGAAATAGATGTGAAGTTTTTGNCGATTATTATTAACAGGCAGAGCAATTGTG
GCCTTTGTGTTACGACCGCCTACCTTGTCTTGTGTTTATTTGTTCGGTTAAAGTTCAAAAGGAGGTATATCGCACATTCA
CACTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1236.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis