Browse Element(s) Details


Os.31518.1.S1_at

Description gb:AK107209.1
DB_XREF= gi:32992418
TID=Os.31518.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31518 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative mitosis-specific cyclin 1 (OSJNBa0036E02.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-125-B12, full insert sequence.
FL= gb:AK107209.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1740211/11Cyclin, N-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g17360NANA1+9987148..9992824retrotransposon protein, putative, unclassified
LOC_Os01g17370OsAffx.7292.1.S1_at1/111+9994366..9996904retrotransposon protein, putative, unclassified
LOC_Os01g17370OsAffx.7292.1.S1_x_at1/111+9994366..9996904retrotransposon protein, putative, unclassified
LOC_Os01g17380Os.47130.4.A1_x_at2/111+9997844..9998170retrotransposon protein, putative, unclassified
LOC_Os01g17390Os.286.1.S1_a_at11/111+10000730..10004531F-box family protein, putative, expressed
LOC_Os01g17396Os.27387.1.S1_at11/111+10004835..10008373expressed protein
LOC_Os01g17396Os.27387.1.S1_x_at11/111+10004835..10008373expressed protein
LOC_Os01g17396Os.27387.2.S1_x_at11/111+10004835..10008373expressed protein
LOC_Os01g17396Os.27387.2.S1_at11/111+10004835..10008373expressed protein
LOC_Os01g17402Os.31518.1.S1_at11/111+10008653..10012233Cyclin, N-terminal domain containing protein, expressed
LOC_Os01g17402Os.31518.2.S1_x_at10/111+10008653..10012233Cyclin, N-terminal domain containing protein, expressed
LOC_Os01g17410OsAffx.11090.1.S1_at11/111+10013004..10013216hypothetical protein
LOC_Os01g17420NANA1+10015530..10017154hypothetical protein
LOC_Os01g17430Os.1236.1.S1_at11/111+10018208..10023767Adaptin N terminal region family protein, expressed
LOC_Os01g17440Os.47130.4.A1_x_at3/111+10025332..10027790retrotransposon protein, putative, unclassified
LOC_Os01g17440Os.27455.2.S1_at1/111+10025332..10027790retrotransposon protein, putative, unclassified
LOC_Os01g17450Os.28943.1.S1_x_at4/111+10028759..10032001retrotransposon protein, putative, unclassified
LOC_Os01g17460NANA1+10032622..10038585retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0000074biological_processregulation of progression through cell cycle
GO:0001558biological_processregulation of cell growth
GO:0007049biological_processcell cycle
GO:0016538molecular_functioncyclin-dependent protein kinase regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31518.1.S1_at--748--3611Chr01:10008894..10008918 (25 bp)
CTTGAGCTCTCGCTGTTGGAATTTT
LOC_Os01g17402
Os.31518.1.S1_at--68--4131Chr01:10008884..10008908 (25 bp)
CGCTGTTGGAATTTTGGCCTCGATT
LOC_Os01g17402
Os.31518.1.S1_at--144--8431Chr01:10008869..10008893 (25 bp)
GGCCTCGATTGGAAGAACATGTGCA
LOC_Os01g17402
Os.31518.1.S1_at--776--5491Chr01:10008855..10008879 (25 bp)
GAACATGTGCATAGATAGGATCGGA
LOC_Os01g17402
Os.31518.1.S1_at--491--1251Chr01:10008843..10008867 (25 bp)
AGATAGGATCGGATCGTCGCCGCGT
LOC_Os01g17402
Os.31518.1.S1_at--626--4651Chr01:10008822..10008846 (25 bp)
GCGTCGTCGTATCATCGCTTTGATG
LOC_Os01g17402
Os.31518.1.S1_at--415--3871Chr01:10008815..10008839 (25 bp)
CGTATCATCGCTTTGATGTTACCCC
LOC_Os01g17402
Os.31518.1.S1_at--1034--3111Chr01:10008767..10008791 (25 bp)
AATTTTGGGTTCCTGATTTGATTGG
LOC_Os01g17402
Os.31518.1.S1_at--138--6531Chr01:10008753..10008777 (25 bp)
GATTTGATTGGATTGCTACTGATTC
LOC_Os01g17402
Os.31518.1.S1_at--767--10711Chr01:10008741..10008765 (25 bp)
TTGCTACTGATTCGAATTTGGTGCG
LOC_Os01g17402
Os.31518.1.S1_at--671--3551Chr01:10008698..10008722 (25 bp)
CATCTTGATGTTTATTCTTTTTCCC
LOC_Os01g17402
Target Sequence 
CTTGAGCTCTCGCTGTTGGAATTTTGGCCTCGATTGGAAGAACATGTGCATAGATAGGATCGGATCGTCGCCGCGTCGTC
GTATCATCGCTTTGATGTTACCCCCCGTTTCTGATTTGATTCTTCCAAATTTTGGGTTCCTGATTTGATTGGATTGCTAC
TGATTCGAATTTGGTGCGAATGAAATTATGAAAAATCATCTTGATGTTTATTCTTTTTCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31518.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis