Browse Element(s) Details


OsAffx.11090.1.S1_at

Description tigr:9629.m01737
TID=OsAffx.11090.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1741011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g17360NANA1+9987148..9992824retrotransposon protein, putative, unclassified
LOC_Os01g17370OsAffx.7292.1.S1_at1/111+9994366..9996904retrotransposon protein, putative, unclassified
LOC_Os01g17370OsAffx.7292.1.S1_x_at1/111+9994366..9996904retrotransposon protein, putative, unclassified
LOC_Os01g17380Os.47130.4.A1_x_at2/111+9997844..9998170retrotransposon protein, putative, unclassified
LOC_Os01g17390Os.286.1.S1_a_at11/111+10000730..10004531F-box family protein, putative, expressed
LOC_Os01g17396Os.27387.1.S1_at11/111+10004835..10008373expressed protein
LOC_Os01g17396Os.27387.1.S1_x_at11/111+10004835..10008373expressed protein
LOC_Os01g17396Os.27387.2.S1_x_at11/111+10004835..10008373expressed protein
LOC_Os01g17396Os.27387.2.S1_at11/111+10004835..10008373expressed protein
LOC_Os01g17402Os.31518.1.S1_at11/111+10008653..10012233Cyclin, N-terminal domain containing protein, expressed
LOC_Os01g17402Os.31518.2.S1_x_at10/111+10008653..10012233Cyclin, N-terminal domain containing protein, expressed
LOC_Os01g17410OsAffx.11090.1.S1_at11/111+10013004..10013216hypothetical protein
LOC_Os01g17420NANA1+10015530..10017154hypothetical protein
LOC_Os01g17430Os.1236.1.S1_at11/111+10018208..10023767Adaptin N terminal region family protein, expressed
LOC_Os01g17440Os.47130.4.A1_x_at3/111+10025332..10027790retrotransposon protein, putative, unclassified
LOC_Os01g17440Os.27455.2.S1_at1/111+10025332..10027790retrotransposon protein, putative, unclassified
LOC_Os01g17450Os.28943.1.S1_x_at4/111+10028759..10032001retrotransposon protein, putative, unclassified
LOC_Os01g17460NANA1+10032622..10038585retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11090.1.S1_at--1140--4251Chr01:10013101..10013125 (25 bp)
CCTTTACTAGCCTCCGTCTTGCTAG
LOC_Os01g17410
OsAffx.11090.1.S1_at--920--9891Chr01:10013105..10013129 (25 bp)
TACTAGCCTCCGTCTTGCTAGCTGT
LOC_Os01g17410
OsAffx.11090.1.S1_at--193--9991Chr01:10013108..10013132 (25 bp)
TAGCCTCCGTCTTGCTAGCTGTCCT
LOC_Os01g17410
OsAffx.11090.1.S1_at--47--9591Chr01:10013117..10013141 (25 bp)
TCTTGCTAGCTGTCCTCCGCTGTGG
LOC_Os01g17410
OsAffx.11090.1.S1_at--782--9291Chr01:10013132..10013156 (25 bp)
TCCGCTGTGGGACTCCATCTTACTC
LOC_Os01g17410
OsAffx.11090.1.S1_at--673--3891Chr01:10013136..10013160 (25 bp)
CTGTGGGACTCCATCTTACTCGCCA
LOC_Os01g17410
OsAffx.11090.1.S1_at--1128--431Chr01:10013148..10013172 (25 bp)
ATCTTACTCGCCATCGATGTAGCGC
LOC_Os01g17410
OsAffx.11090.1.S1_at--1078--10471Chr01:10013151..10013175 (25 bp)
TTACTCGCCATCGATGTAGCGCGGA
LOC_Os01g17410
OsAffx.11090.1.S1_at--297--9911Chr01:10013152..10013176 (25 bp)
TACTCGCCATCGATGTAGCGCGGAC
LOC_Os01g17410
OsAffx.11090.1.S1_at--368--4431Chr01:10013157..10013181 (25 bp)
GCCATCGATGTAGCGCGGACCTTTA
LOC_Os01g17410
OsAffx.11090.1.S1_at--652--4051Chr01:10013162..10013186 (25 bp)
CGATGTAGCGCGGACCTTTAGTGGA
LOC_Os01g17410
Target Sequence 
CCTTTACTAGCCTCCGTCTTGCTAGCTGTCCTCCGCTGTGGGACTCCATCTTACTCGCCATCGATGTAGCGCGGACCTTT
AGTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11090.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis