Browse Element(s) Details


Os.12379.1.S1_at

Description gb:AK062915.1
DB_XREF= gi:32972933
TID=Os.12379.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12379 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-108-H01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-108-H01, full insert sequence.
FL= gb:AK062915.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g321209/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g32090Os.21287.1.S1_at10/118+19765746..19774901DEAD/DEAH box helicase family protein, expressed
LOC_Os08g32090Os.31771.2.S1_at1/118+19765746..19774901DEAD/DEAH box helicase family protein, expressed
LOC_Os08g32090Os.16899.1.S1_at1/118+19765746..19774901DEAD/DEAH box helicase family protein, expressed
LOC_Os08g32100Os.51874.1.S1_at11/118+19780291..19785934transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g32100Os.25010.1.S1_at11/118+19780291..19785934transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g32110OsAffx.6005.1.S1_at10/118+19787693..19790532hypothetical protein
LOC_Os08g32120Os.12379.1.S1_at9/118+19795820..19796465expressed protein
LOC_Os08g32130Os.24686.1.A1_at7/118+19804317..19807591DnaJ domain containing protein, expressed
LOC_Os08g32140NANA8+19809907..19812014retrotransposon, putative, centromere-specific, expressed
LOC_Os08g32150NANA8+19813505..19814668retrotransposon, putative, centromere-specific, expressed
LOC_Os08g32160Os.9563.1.S1_at11/118+19817711..19819546oxidoreductase, 2OG-Fe oxygenase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12379.1.S1_at--148--4011Chr08:19795874..19795993 (25 bp)
CGTCCTGCTCAGCTCAGGAGATGGT
LOC_Os08g32120
Os.12379.1.S1_at--908--5751Chr08:19796022..19796046 (25 bp)
GACGGGATCAAGTCGAAGCTTCGCG
LOC_Os08g32120
Os.12379.1.S1_at--1083--8371Chr08:19796087..19796111 (25 bp)
GGCGATGATGACGTACGACAAGATG
LOC_Os08g32120
Os.12379.1.S1_at--1016--3791Chr08:19796223..19796247 (25 bp)
CTCGCCTTCTGATTTCTGATTCATC
LOC_Os08g32120
Os.12379.1.S1_at--192--3371Chr08:19796255..19796279 (25 bp)
CACCATCGAGAATCCAATTAAGCAA
LOC_Os08g32120
Os.12379.1.S1_at--778--6791Chr08:19796300..19796324 (25 bp)
GTTATATTGATCATCGCCAACATCG
LOC_Os08g32120
Os.12379.1.S1_at--971--9351Chr08:19796322..19796346 (25 bp)
TCGAAACATTCAAGCGACAGTATTT
LOC_Os08g32120
Os.12379.1.S1_at--974--6611Chr08:19796352..19796376 (25 bp)
GTTGTTATAGATGCGGAGAATCCCA
LOC_Os08g32120
Os.12379.1.S1_at--184--8031Chr08:19796366..19796390 (25 bp)
GGAGAATCCCATCAAAACAGTTACT
LOC_Os08g32120
Os.12379.1.S1_at--313--3171NONE
AATTGTTACCGTGTTTGTGGATGGA
NONE
Os.12379.1.S1_at--916--231NONE
ATATACCATCCGTGTAATCGCCTAT
NONE
Target Sequence 
CGTCCTGCTCAGCTCAGGAGATGGTGGTGATGGGGCAGCTGGGGAGGTTCATGGACGGGATCAAGTCGAAGCTTCGCGGC
GGCGGAGGGAGGAAGACAGGGAGGAAGAAGGAGGCGGCGGCGATGATGACGTACGACAAGATGGACAAGACGGAGAGCAT
GAGGGTGGAGATCAGGAGCAGGCAGGCGCAGAAGCTCATCGCCAAGAACCTCGTCGCCGCCGACTCCATCGGCCGCCGCA
ACAAGCGCTTCTTCCTCGCCTTCTGATTTCTGATTCATCAGTTCATCACCATCGAGAATCCAATTAAGCAAACAAAATAT
ATATTTATGTTGTTATATTGATCATCGCCAACATCGAAACATTCAAGCGACAGTATTTACTATGTTGTTATAGATGCGGA
GAATCCCATCAAAACAGTTACTGAAATTTNGCTGTTCGTCNNGGAGATTCCNCGAAGAATTGTTACCGTGTTTGTGGATG
GAGTGATATATATATATATACCATCCGTGTAATCGCCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12379.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis