Browse Element(s) Details


Os.12394.1.S1_at

Description gb:CB683246
DB_XREF= gi:29686971
DB_XREF=OSJNEf11F23.f
CLONE=OSJNEf11F23
TID=Os.12394.1
CNT=148
FEA=FLmRNA
TIER=Stack
STK=11
UG=Os.12394 (NCBI UniGene Cluster)
UG_TITLE=Glycolate oxidase (GOX) mRNA, complete cds
FL= gb:AF022740.1 gb:AK098878.1 gb:AK120304.1 gb:AK061719.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5722010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g57180OsAffx.25741.1.S1_at11/113+32542335..32542706hypothetical protein
LOC_Os03g57190Os.19844.1.S1_at11/113+32553330..32557193TCP family transcription factor containing protein, expressed
LOC_Os03g57200Os.12200.1.S1_s_at11/113+32558178..32559224glutathione S-transferase GSTU1, putative, expressed
LOC_Os03g57210Os.9472.1.S1_at11/113+32563547..32566812expressed protein
LOC_Os03g57220Os.12394.1.S1_at10/113+32567478..32571470expressed protein
LOC_Os03g57230OsAffx.3630.1.S1_at10/113+32571688..32572681hypothetical protein
LOC_Os03g57230OsAffx.23380.1.S1_at1/113+32571688..32572681hypothetical protein
LOC_Os03g57230Os.20851.1.A1_x_at1/113+32571688..32572681hypothetical protein
LOC_Os03g57230OsAffx.5035.1.S1_at1/113+32571688..32572681hypothetical protein
LOC_Os03g57230Os.55580.1.S1_at1/113+32571688..32572681hypothetical protein
LOC_Os03g57240Os.52475.1.S1_at10/113+32584630..32585843expressed protein
LOC_Os03g57240Os.52475.1.S1_x_at10/113+32584630..32585843expressed protein
LOC_Os03g57260Os.49626.1.S1_at11/113+32595020..32599572GRF zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008891molecular_functionglycolate oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12394.1.S1_at--352--8391Chr03:32570661..32570685 (25 bp)
GGCGCATCCCGGTGTACCTCGACGG
LOC_Os03g57220
Os.12394.1.S1_at--17--4991Chr03:32570664..32570688 (25 bp)
GCATCCCGGTGTACCTCGACGGCGG
LOC_Os03g57220
Os.12394.1.S1_at--479--6351Chr03:32570905..32570929 (25 bp)
GATGCGGGAGGAGTTCGAGCTCACC
LOC_Os03g57220
Os.12394.1.S1_at--784--3911Chr03:32571047..32571071 (25 bp)
CGGCGAACTCTAGCCAAACAATAAA
LOC_Os03g57220
Os.12394.1.S1_at--1069--5431Chr03:32571051..32571075 (25 bp)
GAACTCTAGCCAAACAATAAACAAT
LOC_Os03g57220
Os.12394.1.S1_at--766--1971Chr03:32571053..32571077 (25 bp)
ACTCTAGCCAAACAATAAACAATAT
LOC_Os03g57220
Os.12394.1.S1_at--311--4391Chr03:32571059..32571083 (25 bp)
GCCAAACAATAAACAATATCGACGA
LOC_Os03g57220
Os.12394.1.S1_at--799--1871NONE
ACGTAGCTCCGTGCACCCCTCGTAA
NONE
Os.12394.1.S1_at--419--4011Chr03:32571182..32571206 (25 bp)
CGTAACTGGGTCGTTCATGCTCTTA
LOC_Os03g57220
Os.12394.1.S1_at--775--7051Chr03:32571183..32571207 (25 bp)
GTAACTGGGTCGTTCATGCTCTTAA
LOC_Os03g57220
Os.12394.1.S1_at--1154--9791Chr03:32571184..32571208 (25 bp)
TAACTGGGTCGTTCATGCTCTTAAT
LOC_Os03g57220
Target Sequence 
GGCGCATCCCGGTGTACCTCGACGGCGGCGTCCGCCGCGGCACCGACGTCTTCAAGGCGCTCGCCCTCGGCGCCGCCGGC
GTCTTCATCGGGAGGCCGGTGGTGTTCGCGCTGGCGGCGGAGGGGGAGNCCGGGGTGAGGAACGTGCTGCGGATGATGCG
GGAGGAGTTCGAGCTCACCATGGCGCTCAGCGGATGCACCTCGCTCGCCGACATCACCCGCGCCCACATNCTACACCGAC
GCCGNACCGCCTCGCCCGCCCCTTCCCCAGGTTGTGAGGACCTCGCCCGCCGCCGCCGCCGGCGAACTCTAGCCAAACAA
TAAACAATATCGACGACGCCAGAGAGCACGCCGATTAATTAATTAGGTAATTTTTGCAAAAGAATCTCGTCGATCCACAC
GCGCGCAAGCAACACACGTAGCTCCGTGCACCCCTCGTAACTGGGTCGTTCATGCTCTTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12394.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis