Browse Element(s) Details


Os.12414.1.S1_at

Description gb:AK071977.1
DB_XREF= gi:32982000
TID=Os.12414.1
CNT=13
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.12414 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013067A20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013087E18, full insert sequence.
FL= gb:AK071977.1 gb:AK098959.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3680011/113-dehydroquinate synthase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g36750Os.55638.1.S1_at11/119+21199250..21202282L-ascorbate peroxidase 4, putative, expressed
LOC_Os09g36750OsAffx.30157.1.S1_s_at11/119+21199250..21202282L-ascorbate peroxidase 4, putative, expressed
LOC_Os09g36750OsAffx.30157.1.S1_at10/119+21199250..21202282L-ascorbate peroxidase 4, putative, expressed
LOC_Os09g36760OsAffx.30158.1.S1_at11/119+21208472..21212573expressed protein
LOC_Os09g36760OsAffx.30664.1.S1_s_at1/119+21208472..21212573expressed protein
LOC_Os09g36770Os.22661.2.S1_x_at11/119+21212817..21222455C2 domain-containing protein, putative, expressed
LOC_Os09g36770Os.22661.3.S1_x_at11/119+21212817..21222455C2 domain-containing protein, putative, expressed
LOC_Os09g36770Os.31128.1.S1_x_at2/119+21212817..21222455C2 domain-containing protein, putative, expressed
LOC_Os09g36790OsAffx.30160.1.S1_at11/119+21224026..21224977expressed protein
LOC_Os09g36800Os.12414.1.S1_at11/119+21225480..212288503-dehydroquinate synthase, putative, expressed
LOC_Os09g36810Os.49945.1.S1_at11/119+21229822..21236330Glycosyl hydrolases family 35 protein, expressed
LOC_Os09g36820OsAffx.18015.1.S1_at11/119+21239269..21242101expressed protein
LOC_Os09g36830OsAffx.6495.1.S1_s_at11/119+21242726..21245347SKP1-like protein 1B, putative, expressed
LOC_Os09g36830OsAffx.6495.1.S1_at10/119+21242726..21245347SKP1-like protein 1B, putative, expressed
LOC_Os09g36840OsAffx.24469.1.S1_x_at1/119+21245498..21246097hypothetical protein
LOC_Os09g36850OsAffx.6497.1.S1_s_at11/119+21251392..21252385expressed protein
LOC_Os09g36860Os.10735.1.S1_at11/119+21253796..21256372Acyl carrier protein II, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12414.1.S1_at--843--2131Chr09:21226181..21226202 (22 bp)
ACAGTTATGGCAGCTGACATGTCTC
LOC_Os09g36800
Os.12414.1.S1_at--564--1791Chr09:21226156..21226180 (25 bp)
ACCGCCTGGGTTGGATAGACGAGTC
LOC_Os09g36800
Os.12414.1.S1_at--1017--5391Chr09:21226095..21226119 (25 bp)
GAAGCTTCCAATTACACCTCCAGAG
LOC_Os09g36800
Os.12414.1.S1_at--927--3871Chr09:21225795..21225819 (25 bp)
CTGTGTTTTCACTGGCGATTACGAC
LOC_Os09g36800
Os.12414.1.S1_at--726--131Chr09:21225778..21225802 (25 bp)
ATTACGACAGGAATGCCCTCGACGA
LOC_Os09g36800
Os.12414.1.S1_at--657--111Chr09:21225741..21225765 (25 bp)
ATTCTGCGACTGCTGATTCTTCCTA
LOC_Os09g36800
Os.12414.1.S1_at--74--6571Chr09:21225727..21225751 (25 bp)
GATTCTTCCTACTTGGATCTTCAGA
LOC_Os09g36800
Os.12414.1.S1_at--216--10851Chr09:21225588..21225612 (25 bp)
TTGGTTTCTGGTTGTAGCGCGTAAA
LOC_Os09g36800
Os.12414.1.S1_at--72--511Chr09:21225554..21225578 (25 bp)
ATCGTGATACAGTTGTCCCCATTGA
LOC_Os09g36800
Os.12414.1.S1_at--7--1071Chr09:21225524..21225548 (25 bp)
AGGGTTTACTGCATTTTCCTTGCTG
LOC_Os09g36800
Os.12414.1.S1_at--64--9131Chr09:21225504..21225528 (25 bp)
TGCTGTTGCCAATTCTTGCACCAGA
LOC_Os09g36800
Target Sequence 
ACAGTTATGGCAGCTGACATGTCTCNACCGCCTGGGTTGGATAGACGAGTCAATCAAGAAACGGGCAATTGACATACTAG
AGAAAGCGAAGCTTCCAATTACACCTCCAGAGGCCATGACAGTGGAGAAGTTCAAAAGTATTATGGCCGTTGATAAGAAG
GTTGCTGATGGATTGCTGAGGCTCATCCTCCTGAAAGGACCTCTGGGAAGCTGTGTTTTCACTGGCGATTACGACAGGAA
TGCCCTCGACGAAACCCTCCGTGCATTCTGCGACTGCTGATTCTTCCTACTTGGATCTTCAGACTGTATACTAAATAGGC
TACATTATCATTTCAGAGAGGAGACTGCATTGTATATGTATGAGATCTTTCCCCCTTTTTTTTTTGTCGGAGAAATAATG
GAGAATGTGGATAGGGGTTGGTTTCTGGTTGTAGCGCGTAAAGACTGATCAATCGTGATACAGTTGTCCCCATTGACAAG
AAGGGTTTACTGCATTTTCCTTGCTGTTGCCAATTCTTGCACCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12414.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis