Browse Element(s) Details


Os.49945.1.S1_at

Description gb:AK119414.1
DB_XREF= gi:37989037
TID=Os.49945.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49945 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-132-F12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-132-F12, full insert sequence.
FL= gb:AK119414.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3681011/11Glycosyl hydrolases family 35 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g36760OsAffx.30158.1.S1_at11/119+21208472..21212573expressed protein
LOC_Os09g36760OsAffx.30664.1.S1_s_at1/119+21208472..21212573expressed protein
LOC_Os09g36770Os.22661.2.S1_x_at11/119+21212817..21222455C2 domain-containing protein, putative, expressed
LOC_Os09g36770Os.22661.3.S1_x_at11/119+21212817..21222455C2 domain-containing protein, putative, expressed
LOC_Os09g36770Os.31128.1.S1_x_at2/119+21212817..21222455C2 domain-containing protein, putative, expressed
LOC_Os09g36790OsAffx.30160.1.S1_at11/119+21224026..21224977expressed protein
LOC_Os09g36800Os.12414.1.S1_at11/119+21225480..212288503-dehydroquinate synthase, putative, expressed
LOC_Os09g36810Os.49945.1.S1_at11/119+21229822..21236330Glycosyl hydrolases family 35 protein, expressed
LOC_Os09g36820OsAffx.18015.1.S1_at11/119+21239269..21242101expressed protein
LOC_Os09g36830OsAffx.6495.1.S1_s_at11/119+21242726..21245347SKP1-like protein 1B, putative, expressed
LOC_Os09g36830OsAffx.6495.1.S1_at10/119+21242726..21245347SKP1-like protein 1B, putative, expressed
LOC_Os09g36840OsAffx.24469.1.S1_x_at1/119+21245498..21246097hypothetical protein
LOC_Os09g36850OsAffx.6497.1.S1_s_at11/119+21251392..21252385expressed protein
LOC_Os09g36860Os.10735.1.S1_at11/119+21253796..21256372Acyl carrier protein II, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004565molecular_functionbeta-galactosidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49945.1.S1_at--19--1991Chr09:21234684..21234708 (25 bp)
ACTCCTGATGCAAAGGCGATCGTTG
LOC_Os09g36810
Os.49945.1.S1_at--102--9831Chr09:21235064..21235088 (25 bp)
TAAACACGGTGTACGGCGCGGACAT
LOC_Os09g36810
Os.49945.1.S1_at--516--5311Chr09:21235165..21235189 (25 bp)
GAAGGGATGCTGCTGATTGACACAT
LOC_Os09g36810
Os.49945.1.S1_at--360--8491Chr09:21235200..21235224 (25 bp)
TGGCTCCTCTTGCTTGTGTAATTCA
LOC_Os09g36810
Os.49945.1.S1_at--487--4931Chr09:21235211..21235235 (25 bp)
GCTTGTGTAATTCATCTCGTTTTGG
LOC_Os09g36810
Os.49945.1.S1_at--113--471Chr09:21235224..21235248 (25 bp)
ATCTCGTTTTGGTTCTCATTGATGA
LOC_Os09g36810
Os.49945.1.S1_at--163--711Chr09:21235245..21235269 (25 bp)
ATGAGTCTTGAGTGCCTTGTGTGAT
LOC_Os09g36810
Os.49945.1.S1_at--18--2911Chr09:21235328..21235352 (25 bp)
AAGGTAGCTGCTGATAGACTCGAAG
LOC_Os09g36810
Os.49945.1.S1_at--1054--751Chr09:21235353..21235377 (25 bp)
ATGTCTTCTATTCTTAATCCTCTCC
LOC_Os09g36810
Os.49945.1.S1_at--24--9571Chr09:21235364..21235388 (25 bp)
TCTTAATCCTCTCCTATCATATGTA
LOC_Os09g36810
Os.49945.1.S1_at--670--1731Chr09:21235419..21235443 (25 bp)
ACCATCACAGGTTGACAGACAGTTT
LOC_Os09g36810
Target Sequence 
ACTCCTGATGCAAAGGCGATCGTTGAGAAGGAATGCCTCGGCAAGGAGTCGTGCGTGCTGCCGGTGGTAAACACGGTGTA
CGGCGCGGACATCAACTGCCCCGCGACGACGGCCACGCTGGCGGTGCAGGTGAGATGCAAGGTATCAGGGGCGCAGGCGG
CTTAGGAAGAAGGGATGCTGCTGATTGACACATTGTTTCAATTTGGCTCCTCTTGCTTGTGTAATTCATCTCGTTTTGGT
TCTCATTGATGAGTCTTGAGTGCCTTGTGTGATTAAAATTTGGAAGAGACATGCCTTTTGGGGATCATGGGGGGTATTAA
TATGCAACAGGAAGGTAGCTGCTGATAGACTCGAAGATGTCTTCTATTCTTAATCCTCTCCTATCATATGTATTGATTCT
GTAGGTGTTGAAAATAATATTAACCATCACAGGTTGACAGACAGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49945.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis