Browse Element(s) Details


OsAffx.30160.1.S1_at

Description tigr:9637.m03106
TID=OsAffx.30160.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3679011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g36740Os.50511.1.S1_at11/119+21197022..21199207male sterility MS5, putative, expressed
LOC_Os09g36750Os.55638.1.S1_at11/119+21199250..21202282L-ascorbate peroxidase 4, putative, expressed
LOC_Os09g36750OsAffx.30157.1.S1_s_at11/119+21199250..21202282L-ascorbate peroxidase 4, putative, expressed
LOC_Os09g36750OsAffx.30157.1.S1_at10/119+21199250..21202282L-ascorbate peroxidase 4, putative, expressed
LOC_Os09g36760OsAffx.30158.1.S1_at11/119+21208472..21212573expressed protein
LOC_Os09g36760OsAffx.30664.1.S1_s_at1/119+21208472..21212573expressed protein
LOC_Os09g36770Os.22661.2.S1_x_at11/119+21212817..21222455C2 domain-containing protein, putative, expressed
LOC_Os09g36770Os.22661.3.S1_x_at11/119+21212817..21222455C2 domain-containing protein, putative, expressed
LOC_Os09g36770Os.31128.1.S1_x_at2/119+21212817..21222455C2 domain-containing protein, putative, expressed
LOC_Os09g36790OsAffx.30160.1.S1_at11/119+21224026..21224977expressed protein
LOC_Os09g36800Os.12414.1.S1_at11/119+21225480..212288503-dehydroquinate synthase, putative, expressed
LOC_Os09g36810Os.49945.1.S1_at11/119+21229822..21236330Glycosyl hydrolases family 35 protein, expressed
LOC_Os09g36820OsAffx.18015.1.S1_at11/119+21239269..21242101expressed protein
LOC_Os09g36830OsAffx.6495.1.S1_s_at11/119+21242726..21245347SKP1-like protein 1B, putative, expressed
LOC_Os09g36830OsAffx.6495.1.S1_at10/119+21242726..21245347SKP1-like protein 1B, putative, expressed
LOC_Os09g36840OsAffx.24469.1.S1_x_at1/119+21245498..21246097hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30160.1.S1_at--1055--8211Chr09:21224467..21224491 (25 bp)
GGCAAAATCGCCATCGTTCATGGCT
LOC_Os09g36790
OsAffx.30160.1.S1_at--384--3051Chr09:21224472..21224496 (25 bp)
AATCGCCATCGTTCATGGCTTCCAA
LOC_Os09g36790
OsAffx.30160.1.S1_at--562--8491Chr09:21224487..21224511 (25 bp)
TGGCTTCCAACAAGCACTATCACGG
LOC_Os09g36790
OsAffx.30160.1.S1_at--914--2211Chr09:21224496..21224520 (25 bp)
ACAAGCACTATCACGGCGTCGTCAA
LOC_Os09g36790
OsAffx.30160.1.S1_at--224--4491Chr09:21224626..21224650 (25 bp)
GCCGGCGCCACAACGTTCCAAGAAA
LOC_Os09g36790
OsAffx.30160.1.S1_at--937--3251Chr09:21224636..21224660 (25 bp)
CAACGTTCCAAGAAACCAAGCCACG
LOC_Os09g36790
OsAffx.30160.1.S1_at--1055--7751Chr09:21224716..21224740 (25 bp)
GGTGCCCATCCCTGTACAGGCGGCG
LOC_Os09g36790
OsAffx.30160.1.S1_at--330--4611Chr09:21224765..21224789 (25 bp)
GCGAGCCAGCAAGAGGCGGCGGAAT
LOC_Os09g36790
OsAffx.30160.1.S1_at--3--5751Chr09:21224800..21224824 (25 bp)
GACGGACTCGCTGTACTCGGTGTCG
LOC_Os09g36790
OsAffx.30160.1.S1_at--770--5711Chr09:21224804..21224828 (25 bp)
GACTCGCTGTACTCGGTGTCGCCGC
LOC_Os09g36790
OsAffx.30160.1.S1_at--865--4091Chr09:21224850..21224874 (25 bp)
CGACGTCCCTGCTGGTCGGTGCAGC
LOC_Os09g36790
Target Sequence 
GGCAAAATCGCCATCGTTCATGGCTTCCAACAAGCACTATCACGGCGTCGTCAACCACCAGCCTCCGTTCCCACAACCGC
CGGCGACGCCACCGCAGCCTCCGCTCCTGCCGCTGCCGGCGCGCCCCCATGCCCCGCCGCCGCAGCAGCACGCCGCCTGG
CCGGCGCCACAACGTTCCAAGAAACCAAGCCACGCCACCGCCACCGCCGCCGCCGCCGCCGCGGCGCTGGGCCCCAAGAA
GACGGCGCCGGTGCCCATCCCTGTACAGGCGGCGCCGTCGAAGAAGAGGGCGGCGGCGGCGAGCCAGCAAGAGGCGGCGG
AATGGACGACGACGACGGACTCGCTGTACTCGGTGTCGCCGCCGCCGAGCTGCGTTCCGATGCCGACGTCCCTGCTGGTC
GGTGCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30160.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis