Browse Element(s) Details


Os.50511.1.S1_at

Description gb:AK121538.1
DB_XREF= gi:37991161
TID=Os.50511.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.50511 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-124-C06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033031F12, full insert sequence.
FL= gb:AK105425.1 gb:AK121685.1 gb:AK121538.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3674011/11male sterility MS5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g36710Os.3737.1.S1_at11/119+21171211..21173585Proteasome subunit alpha type 7, putative, expressed
LOC_Os09g36720OsAffx.6494.1.S1_at10/119+21174222..21174647hypothetical protein
LOC_Os09g36730Os.7125.1.S1_at11/119+21189041..21190257Myb-related protein Hv1, putative, expressed
LOC_Os09g36740Os.50511.1.S1_at11/119+21197022..21199207male sterility MS5, putative, expressed
LOC_Os09g36750Os.55638.1.S1_at11/119+21199250..21202282L-ascorbate peroxidase 4, putative, expressed
LOC_Os09g36750OsAffx.30157.1.S1_s_at11/119+21199250..21202282L-ascorbate peroxidase 4, putative, expressed
LOC_Os09g36750OsAffx.30157.1.S1_at10/119+21199250..21202282L-ascorbate peroxidase 4, putative, expressed
LOC_Os09g36760OsAffx.30158.1.S1_at11/119+21208472..21212573expressed protein
LOC_Os09g36760OsAffx.30664.1.S1_s_at1/119+21208472..21212573expressed protein
LOC_Os09g36770Os.22661.2.S1_x_at11/119+21212817..21222455C2 domain-containing protein, putative, expressed
LOC_Os09g36770Os.22661.3.S1_x_at11/119+21212817..21222455C2 domain-containing protein, putative, expressed
LOC_Os09g36770Os.31128.1.S1_x_at2/119+21212817..21222455C2 domain-containing protein, putative, expressed
LOC_Os09g36790OsAffx.30160.1.S1_at11/119+21224026..21224977expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009556biological_processmicrosporogenesis
GO:0005634cellular_componentnucleus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50511.1.S1_at--503--8011Chr09:21198652..21198676 (25 bp)
GGAGGAAGTCACTCTCCGCCGAGGA
LOC_Os09g36740
Os.50511.1.S1_at--725--2331Chr09:21198676..21198700 (25 bp)
AAAGATGGCCGGAGCTGCCCGACCA
LOC_Os09g36740
Os.50511.1.S1_at--1134--1391Chr09:21198773..21198797 (25 bp)
AGAACGGAACGACAATTGCTGCAAG
LOC_Os09g36740
Os.50511.1.S1_at--630--2791Chr09:21198852..21198876 (25 bp)
AAGAGGCTGAGGATCTTCCAGGACA
LOC_Os09g36740
Os.50511.1.S1_at--460--6431Chr09:21198863..21198887 (25 bp)
GATCTTCCAGGACATCACACAGACA
LOC_Os09g36740
Os.50511.1.S1_at--720--5631Chr09:21198884..21198908 (25 bp)
GACACTGAACACTTTCTGATTTGAG
LOC_Os09g36740
Os.50511.1.S1_at--339--10311Chr09:21198927..21198951 (25 bp)
TTTCTTTGCAACTCACAGCAGCAGC
LOC_Os09g36740
Os.50511.1.S1_at--240--6031Chr09:21198970..21198994 (25 bp)
GAGATGGGCTTGTTCTCCTGCGAGC
LOC_Os09g36740
Os.50511.1.S1_at--730--1531Chr09:21198992..21199016 (25 bp)
AGCTTTCTATGTCGCCGCTAAGTTA
LOC_Os09g36740
Os.50511.1.S1_at--454--10852Chr09:21199030..21199054 (25 bp)
TTGGGTTTTAGTTCGCTGATGATTC
LOC_Os09g36740
Os.50511.1.S1_at--512--3091Chr09:21199082..21199106 (25 bp)
AATAACAGCTGATTGCTCACTTTCT
LOC_Os09g36740
Target Sequence 
GGAGGAAGTCACTCTCCGCCGAGGAAAGATGGCCGGAGCTGCCCGACCACAGCGCGTTCGACGAGGCCCTCGTCGCGGCG
GTCCTCGCCCCGGTCCTCGATGACTCCGCCGCCGCCGCCGCAGAACGGAACGACAATTGCTGCAAGCCGGCGCCGCCGGC
GGGCTGCGACACGAGCCCGGCGATGAAGGAGAAGATCGGGAAGAGGCTGAGGATCTTCCAGGACATCACACAGACACTGA
ACACTTTCTGATTTGAGTTCTTGATTTTTTTTTCTTTTCTTTGCAACTCACAGCAGCAGCCGTGGCGACGCCGCGAAGGA
GATGGGCTTGTTCTCCTGCGAGCTTTCTATGTCGCCGCTAAGTTAATTTAGGATTCGATTGGGTTTTAGTTCGCTGATGA
TTCTTGATTTGATTTTTTTTAACACACCCTAATAACAGCTGATTGCTCACTTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50511.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis