Browse Element(s) Details


OsAffx.6494.1.S1_at

Description tigr:9637.m03098
TID=OsAffx.6494.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3672010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g36660NANA9+21149216..21150900expressed protein
LOC_Os09g36670Os.49083.1.S1_x_at11/119+21151255..21153806Peptidyl-prolyl cis-trans isomerase 3, putative, expressed
LOC_Os09g36670Os.16549.2.S1_at1/119+21151255..21153806Peptidyl-prolyl cis-trans isomerase 3, putative, expressed
LOC_Os09g36680Os.9417.1.S1_at11/119+21155477..21157464Ribonuclease T2 family protein, expressed
LOC_Os09g36690Os.52946.1.S1_at4/119+21161762..21162475hypothetical protein
LOC_Os09g36690OsAffx.13417.1.S1_x_at2/119+21161762..21162475hypothetical protein
LOC_Os09g36700Os.12922.1.S1_at11/119+21164738..21167166Ribonuclease T2 family protein, expressed
LOC_Os09g36700Os.47388.1.S1_s_at11/119+21164738..21167166Ribonuclease T2 family protein, expressed
LOC_Os09g36710Os.3737.1.S1_at11/119+21171211..21173585Proteasome subunit alpha type 7, putative, expressed
LOC_Os09g36720OsAffx.6494.1.S1_at10/119+21174222..21174647hypothetical protein
LOC_Os09g36730Os.7125.1.S1_at11/119+21189041..21190257Myb-related protein Hv1, putative, expressed
LOC_Os09g36740Os.50511.1.S1_at11/119+21197022..21199207male sterility MS5, putative, expressed
LOC_Os09g36750Os.55638.1.S1_at11/119+21199250..21202282L-ascorbate peroxidase 4, putative, expressed
LOC_Os09g36750OsAffx.30157.1.S1_s_at11/119+21199250..21202282L-ascorbate peroxidase 4, putative, expressed
LOC_Os09g36750OsAffx.30157.1.S1_at10/119+21199250..21202282L-ascorbate peroxidase 4, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6494.1.S1_at--308--9091Chr09:21174259..21174283 (25 bp)
TGCTACTGCTGTTCATGCCAATCTT
LOC_Os09g36720
OsAffx.6494.1.S1_at--135--10551Chr09:21174270..21174294 (25 bp)
TTCATGCCAATCTTCTTTGCTCCAA
LOC_Os09g36720
OsAffx.6494.1.S1_at--330--10571NONE
TTCTTTGCTCCAAGCTGTGGGAACA
NONE
OsAffx.6494.1.S1_at--823--8531Chr09:21174471..21174495 (25 bp)
TGGACGAGCGACATGTACAGGATGT
LOC_Os09g36720
OsAffx.6494.1.S1_at--846--9871Chr09:21174486..21174510 (25 bp)
TACAGGATGTTGTTCTTGTGCAGAA
LOC_Os09g36720
OsAffx.6494.1.S1_at--241--9591Chr09:21174499..21174523 (25 bp)
TCTTGTGCAGAAGCACGAGATGCAA
LOC_Os09g36720
OsAffx.6494.1.S1_at--1110--651Chr09:21174518..21174542 (25 bp)
ATGCAACCAGTACTGCGTCAGCGAG
LOC_Os09g36720
OsAffx.6494.1.S1_at--796--2631Chr09:21174522..21174546 (25 bp)
AACCAGTACTGCGTCAGCGAGGGCG
LOC_Os09g36720
OsAffx.6494.1.S1_at--707--6831Chr09:21174565..21174589 (25 bp)
GTTTCTCATCAGATCCTTCTGCTAC
LOC_Os09g36720
OsAffx.6494.1.S1_at--349--6371Chr09:21174576..21174600 (25 bp)
GATCCTTCTGCTACTGCACTAAAGA
LOC_Os09g36720
OsAffx.6494.1.S1_at--539--4851Chr09:21174585..21174609 (25 bp)
GCTACTGCACTAAAGAATGCGACTG
LOC_Os09g36720
Target Sequence 
TGCTACTGCTGTTCATGCCAATCTTCTTTGCTCCAAGCTGTGGGAACAAGGAAGTCTGCGAGGAGTGGACGAGCGACATG
TACAGGATGTTGTTCTTGTGCAGAAGCACGAGATGCAACCAGTACTGCGTCAGCGAGGGCGCCACGAGGGGGAGATGCGG
TTTCTCATCAGATCCTTCTGCTACTGCACTAAAGAATGCGACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6494.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis