Browse Element(s) Details


Os.3737.1.S1_at

Description gb:AB032061.1
DB_XREF= gi:9186905
GEN=OsPAD1
TID=Os.3737.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.3737 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) OsPAD1 mRNA for alpha 4 subunit of 20S proteasome, complete cds.
PROD=alpha 4 subunit of 20S proteasome
FL= gb:AB032061.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3671011/11Proteasome subunit alpha type 7, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g36650OsAffx.18014.1.S1_at11/119+21145536..21148594expressed protein
LOC_Os09g36660NANA9+21149216..21150900expressed protein
LOC_Os09g36670Os.49083.1.S1_x_at11/119+21151255..21153806Peptidyl-prolyl cis-trans isomerase 3, putative, expressed
LOC_Os09g36670Os.16549.2.S1_at1/119+21151255..21153806Peptidyl-prolyl cis-trans isomerase 3, putative, expressed
LOC_Os09g36680Os.9417.1.S1_at11/119+21155477..21157464Ribonuclease T2 family protein, expressed
LOC_Os09g36690Os.52946.1.S1_at4/119+21161762..21162475hypothetical protein
LOC_Os09g36690OsAffx.13417.1.S1_x_at2/119+21161762..21162475hypothetical protein
LOC_Os09g36700Os.12922.1.S1_at11/119+21164738..21167166Ribonuclease T2 family protein, expressed
LOC_Os09g36700Os.47388.1.S1_s_at11/119+21164738..21167166Ribonuclease T2 family protein, expressed
LOC_Os09g36710Os.3737.1.S1_at11/119+21171211..21173585Proteasome subunit alpha type 7, putative, expressed
LOC_Os09g36720OsAffx.6494.1.S1_at10/119+21174222..21174647hypothetical protein
LOC_Os09g36730Os.7125.1.S1_at11/119+21189041..21190257Myb-related protein Hv1, putative, expressed
LOC_Os09g36740Os.50511.1.S1_at11/119+21197022..21199207male sterility MS5, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0005634cellular_componentnucleus
GO:0005819cellular_componentspindle
GO:0005839cellular_componentproteasome core complex (sensu Eukaryota)
GO:0009524cellular_componentphragmoplast
GO:0019773cellular_componentproteasome core complex, alpha-subunit complex (sensu Eukaryota)
GO:0008233molecular_functionpeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3737.1.S1_at--947--5991Chr09:21171875..21171899 (25 bp)
GAGACCTCTGGCAAAGAGACCATCA
LOC_Os09g36710
Os.3737.1.S1_at--144--6011Chr09:21171890..21171914 (25 bp)
GAGACCATCAAGCTCGCAATCCGTG
LOC_Os09g36710
Os.3737.1.S1_at--213--3031Chr09:21171907..21171927 (21 bp)
AATCCGTGCTCTCCTTGAGGTTGTT
LOC_Os09g36710
Os.3737.1.S1_at--471--1471Chr09:21173138..21173162 (25 bp)
AGAAGGATGGTCTTCGCCAACTCGA
LOC_Os09g36710
Os.3737.1.S1_at--761--7771Chr09:21173233..21173257 (25 bp)
GGTGCCCCTAAGGAGACCTAATTCT
LOC_Os09g36710
Os.3737.1.S1_at--953--1371Chr09:21173246..21173270 (25 bp)
AGACCTAATTCTTCGCTGTACCAAA
LOC_Os09g36710
Os.3737.1.S1_at--700--4731Chr09:21173260..21173284 (25 bp)
GCTGTACCAAATTTTCATTCCATCA
LOC_Os09g36710
Os.3737.1.S1_at--1041--3571Chr09:21173275..21173299 (25 bp)
CATTCCATCAACACATTTAGCGCAT
LOC_Os09g36710
Os.3737.1.S1_at--1083--2071Chr09:21173287..21173311 (25 bp)
ACATTTAGCGCATTACTTGTGTTCC
LOC_Os09g36710
Os.3737.1.S1_at--964--7411Chr09:21173305..21173329 (25 bp)
GTGTTCCACAGCACTGTTTTTAACT
LOC_Os09g36710
Os.3737.1.S1_at--756--5811Chr09:21173399..21173423 (25 bp)
GACCCAAATGCCTTGTGATGTACTT
LOC_Os09g36710
Target Sequence 
GAGACCTCTGGCAAAGAGACCATCAAGCTCGCAATCCGTGCTCTCCTTGAGGTTGTTGAGAGTGGCGGAAAGAACATCGA
GATTGCAGTGATGACACAGAAGGATGGTCTTCGCCAACTCGAGGAGGCTGAAATCGACGAATATGTTGCTGAGATCGAGG
CAGAGAAAGCTGCAGCTGAGGCTGCAAAGAAGGGTGCCCCTAAGGAGACCTAATTCTTCGCTGTACCAAATTTTCATTCC
ATCAACACATTTAGCGCATTACTTGTGTTCCACAGCACTGTTTTTAACTGTTCTAGAGGAACGCTAGATTGTTTGGAGAG
TGAATGATTCTATTCTTATTGCACATCAAGANCCCTTNAGACCCAAATGCCTTGTGATGTACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3737.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis