Browse Element(s) Details


OsAffx.30158.1.S1_at

Description tigr:9637.m03102
TID=OsAffx.30158.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3676011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g36730Os.7125.1.S1_at11/119+21189041..21190257Myb-related protein Hv1, putative, expressed
LOC_Os09g36740Os.50511.1.S1_at11/119+21197022..21199207male sterility MS5, putative, expressed
LOC_Os09g36750Os.55638.1.S1_at11/119+21199250..21202282L-ascorbate peroxidase 4, putative, expressed
LOC_Os09g36750OsAffx.30157.1.S1_s_at11/119+21199250..21202282L-ascorbate peroxidase 4, putative, expressed
LOC_Os09g36750OsAffx.30157.1.S1_at10/119+21199250..21202282L-ascorbate peroxidase 4, putative, expressed
LOC_Os09g36760OsAffx.30158.1.S1_at11/119+21208472..21212573expressed protein
LOC_Os09g36760OsAffx.30664.1.S1_s_at1/119+21208472..21212573expressed protein
LOC_Os09g36770Os.22661.2.S1_x_at11/119+21212817..21222455C2 domain-containing protein, putative, expressed
LOC_Os09g36770Os.22661.3.S1_x_at11/119+21212817..21222455C2 domain-containing protein, putative, expressed
LOC_Os09g36770Os.31128.1.S1_x_at2/119+21212817..21222455C2 domain-containing protein, putative, expressed
LOC_Os09g36790OsAffx.30160.1.S1_at11/119+21224026..21224977expressed protein
LOC_Os09g36800Os.12414.1.S1_at11/119+21225480..212288503-dehydroquinate synthase, putative, expressed
LOC_Os09g36810Os.49945.1.S1_at11/119+21229822..21236330Glycosyl hydrolases family 35 protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30158.1.S1_at--1136--7651Chr09:21211975..21211999 (25 bp)
GGGATCAAAACTCTCCTGACAGTGA
LOC_Os09g36760
OsAffx.30158.1.S1_at--290--7111Chr09:21212049..21212073 (25 bp)
GTCAGAGTCTGCATTCAAGGAACTG
LOC_Os09g36760
OsAffx.30158.1.S1_at--626--271Chr09:21212112..21212136 (25 bp)
ATATGGGCCATATTCGGGTGCTGAA
LOC_Os09g36760
OsAffx.30158.1.S1_at--401--271Chr09:21212147..21212171 (25 bp)
ATATGTCTCGGAAGTCGCCAGTATC
LOC_Os09g36760
OsAffx.30158.1.S1_at--958--5951Chr09:21212255..21212279 (25 bp)
GAGCAATGACCTTGAACAACCTTCA
LOC_Os09g36760
OsAffx.30158.1.S1_at--124--10311Chr09:21212286..21212310 (25 bp)
TTTCCCTAACGTTTTTCAGGCGATG
LOC_Os09g36760
OsAffx.30158.1.S1_at--148--6591Chr09:21212315..21212339 (25 bp)
GATTCGCCAGCGTTTGCATGGAAGC
LOC_Os09g36760
OsAffx.30158.1.S1_at--497--2051Chr09:21212357..21212381 (25 bp)
ACTTCAAGAGTTCAGATCGGATCCT
LOC_Os09g36760
OsAffx.30158.1.S1_at--319--6631Chr09:21212428..21212452 (25 bp)
GTTGGTGCTTGGTAGGTCACTGTAT
LOC_Os09g36760
OsAffx.30158.1.S1_at--1063--6811Chr09:21212501..21212525 (25 bp)
GTTTAACTTACAACCGTCTCTGTCT
LOC_Os09g36760
OsAffx.30158.1.S1_at--126--7171Chr09:21212516..21212540 (25 bp)
GTCTCTGTCTGTTATCGTCTTCTAT
LOC_Os09g36760
Target Sequence 
GGGATCAAAACTCTCCTGACAGTGATACACGCAGTTGTGGTACAACAGGCGGAGGAGCAAAAGCAAAAGAAGAGGTCAGA
GTCTGCATTCAAGGAACTGGAGAAGAAGGCAGAGGAACTAAGATCCCTTGAATCCAAATATGGGCCATATTCGGGTGCTG
AAGGCTATGGAGATATGTCTCGGAAGTCGCCAGTATCAGACAAGCGAGCGAAGGTGGAAGCTCTGAGATGTCGGGCGGAC
GAGGAGAAGAGCAAGTATGAGAAGAGCATTGGGGTCACAAGAGCAATGACCTTGAACAACCTTCAGACAGGTTTCCCTAA
CGTTTTTCAGGCGATGACGGGATTCGCCAGCGTTTGCATGGAAGCGTTTGAATCGGTGTACAACTTCAAGAGTTCAGATC
GGATCCTTGATTCGAAGAGGCTACTAACATGAGATTCTGAGAAGTTGTCTTGTGTTGGTGCTTGGTAGGTCACTGTATAA
AGTGTATACAGTTCTAGAGTTCTTGTAGAATAGCAGGTGGAACAGGGTTTAACTTACAACCGTCTCTGTCTGTTATCGTC
TTCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30158.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis