Browse Element(s) Details


Os.22661.2.S1_x_at

Description gb:AK068206.1
DB_XREF= gi:32978224
TID=Os.22661.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.22661 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013148O13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013148O13, full insert sequence.
FL= gb:AK068206.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3677011/11C2 domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g36730Os.7125.1.S1_at11/119+21189041..21190257Myb-related protein Hv1, putative, expressed
LOC_Os09g36740Os.50511.1.S1_at11/119+21197022..21199207male sterility MS5, putative, expressed
LOC_Os09g36750Os.55638.1.S1_at11/119+21199250..21202282L-ascorbate peroxidase 4, putative, expressed
LOC_Os09g36750OsAffx.30157.1.S1_s_at11/119+21199250..21202282L-ascorbate peroxidase 4, putative, expressed
LOC_Os09g36750OsAffx.30157.1.S1_at10/119+21199250..21202282L-ascorbate peroxidase 4, putative, expressed
LOC_Os09g36760OsAffx.30158.1.S1_at11/119+21208472..21212573expressed protein
LOC_Os09g36760OsAffx.30664.1.S1_s_at1/119+21208472..21212573expressed protein
LOC_Os09g36770Os.22661.2.S1_x_at11/119+21212817..21222455C2 domain-containing protein, putative, expressed
LOC_Os09g36770Os.22661.3.S1_x_at11/119+21212817..21222455C2 domain-containing protein, putative, expressed
LOC_Os09g36770Os.31128.1.S1_x_at2/119+21212817..21222455C2 domain-containing protein, putative, expressed
LOC_Os09g36790OsAffx.30160.1.S1_at11/119+21224026..21224977expressed protein
LOC_Os09g36800Os.12414.1.S1_at11/119+21225480..212288503-dehydroquinate synthase, putative, expressed
LOC_Os09g36810Os.49945.1.S1_at11/119+21229822..21236330Glycosyl hydrolases family 35 protein, expressed
LOC_Os09g36820OsAffx.18015.1.S1_at11/119+21239269..21242101expressed protein
LOC_Os09g36830OsAffx.6495.1.S1_s_at11/119+21242726..21245347SKP1-like protein 1B, putative, expressed
LOC_Os09g36830OsAffx.6495.1.S1_at10/119+21242726..21245347SKP1-like protein 1B, putative, expressed
LOC_Os09g36840OsAffx.24469.1.S1_x_at1/119+21245498..21246097hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22661.2.S1_x_at--539--131Chr09:21214896..21214920 (25 bp)
ATTTAATGGCTATCCCTGGTCTTTA
LOC_Os09g36770
Os.22661.2.S1_x_at--797--8191Chr09:21214403..21214427 (25 bp)
GGAAGTTCCCATAATGGATCCCTCA
LOC_Os09g36770
Os.22661.2.S1_x_at--224--7971Chr09:21214307..21214412 (25 bp)
GGATCCCTCAAAAGCTTCTAAGAAG
LOC_Os09g36770
Os.22661.2.S1_x_at--75--5431Chr09:21214286..21214310 (25 bp)
GAAGCCTGTTGGAATTCTACTTGTG
LOC_Os09g36770
Os.22661.2.S1_x_at--845--2271Chr09:21214216..21214240 (25 bp)
AAATCGGACCCATATGTGAAACTTA
LOC_Os09g36770
Os.22661.2.S1_x_at--399--7991Chr09:21214184..21214207 (24 bp)
GGATGACAAGCTTCCGTCCAAGAAA
LOC_Os09g36770
Os.22661.2.S1_x_at--577--5391Chr09:21214151..21214175 (25 bp)
GAAGCGTAGCAATCTCAATCCAGAG
LOC_Os09g36770
Os.22661.2.S1_x_at--610--8811Chr09:21214106..21214130 (25 bp)
TGTTGTGACAGACCCTGAAACTCAG
LOC_Os09g36770
Os.22661.2.S1_x_at--194--5491Chr09:21213914..21213938 (25 bp)
GAACTTCCCGCAGATGAGACTAAAG
LOC_Os09g36770
Os.22661.2.S1_x_at--728--691Chr09:21213841..21213865 (25 bp)
ATGAGAAGTCCCGTGGTCAGCTTAC
LOC_Os09g36770
Os.22661.2.S1_x_at--335--7111Chr09:21213826..21213850 (25 bp)
GTCAGCTTACTCTGGAGGTGACATA
LOC_Os09g36770
Target Sequence 
ATTTAATGGCTATCCCTGGTCTTTACAGATTTGTTCAGGAGACCATAAAAAAGCAAGTTGTGAGCATGTATTTGTGGCCA
AAGACATTGGAAGTTCCCATAATGGATCCCTCAAAAGCTTCTAAGAAGCCTGTTGGAATTCTACTTGTGAAAGTTTTAAG
AGCTCAAAACCTGCGAAAGAAGGATCTGTTGGGTAAATCGGACCCATATGTGAAACTTAAGATGTCGGATGACAAGCTTC
CGTCCAAGAAAACAACAGTGAAGCGTAGCAATCTCAATCCAGAGTGGAATGAGGATTTCAAATTTGTTGTGACAGACCCT
GAAACTCAGGCACTGGAAATTAATGTCTTTGATTGGGAACAGGTTGGCAAGCATGAGAAAATGGGCATGAACAACATTCT
GTTGAAAGAACTTCCCGCAGATGAGACTAAAGTCATGACTGTTAACTTGCTTAAGACGATGGATCCTAATGATGTACAAA
ATGAGAAGTCCCGTGGTCAGCTTACTCTGGAGGTGACATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22661.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis