Browse Element(s) Details


Os.12517.1.A1_at

Description gb:AK105444.1
DB_XREF= gi:32990653
TID=Os.12517.1
CNT=14
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.12517 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-125-A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-125-A11, full insert sequence.
FL= gb:AK105444.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3931011/11SWIB/MDM2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g39260NANA8+24680176..24681321transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g39270Os.54871.1.S1_at10/118+24685538..24687609Fasciclin-like arabinogalactan protein 7 precursor, putative, expressed
LOC_Os08g39280OsAffx.6082.1.S1_at10/118+24690318..24693387hypothetical protein
LOC_Os08g39290Os.55246.1.S1_at11/118+24694376..24694951EF hand family protein, expressed
LOC_Os08g39290Os.55246.1.S1_x_at11/118+24694376..24694951EF hand family protein, expressed
LOC_Os08g39300Os.10113.1.S1_at11/118+24695267..24698022Serine-glyoxylate aminotransferase, putative, expressed
LOC_Os08g39310Os.12517.1.A1_at11/118+24704847..24709249SWIB/MDM2 domain containing protein, expressed
LOC_Os08g39320OsAffx.17415.1.S1_at11/118+24710021..24711341hypothetical protein
LOC_Os08g39330Os.6423.1.S1_at11/118+24721442..24722816expressed protein
LOC_Os08g39330Os.26088.1.A1_x_at7/118+24721442..24722816expressed protein
LOC_Os08g39330Os.15871.1.A1_at2/118+24721442..24722816expressed protein
LOC_Os08g39340OsAffx.29598.1.S1_at11/118+24728294..24731473expressed protein
LOC_Os08g39350Os.9696.1.S1_at11/118+24733098..24739315Glycerophosphoryl diester phosphodiesterase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12517.1.A1_at--583--5571Chr08:24708381..24708405 (25 bp)
GAAAGTCTAACTGCCGTGAGTGTTT
LOC_Os08g39310
Os.12517.1.A1_at--819--8891Chr08:24708397..24708421 (25 bp)
TGAGTGTTTCGGAGTTGCTGTCACA
LOC_Os08g39310
Os.12517.1.A1_at--12--6691Chr08:24708410..24708434 (25 bp)
GTTGCTGTCACAACACCTTTTCAAG
LOC_Os08g39310
Os.12517.1.A1_at--1037--5191Chr08:24708768..24708792 (25 bp)
GAATCGTCTTACTGGACTCTAGTTG
LOC_Os08g39310
Os.12517.1.A1_at--300--2951Chr08:24708892..24708916 (25 bp)
AAGGCTGTAGGCTAATCTCTTCACA
LOC_Os08g39310
Os.12517.1.A1_at--15--10131Chr08:24708951..24708975 (25 bp)
TATGTAGTCTTGAGTCTTCTTGGAA
LOC_Os08g39310
Os.12517.1.A1_at--696--6091Chr08:24708976..24709000 (25 bp)
GAGTCACATGTGGTAGGCTATCTTG
LOC_Os08g39310
Os.12517.1.A1_at--1032--7811Chr08:24709105..24709129 (25 bp)
GGTAAGTAGTTGCTTTCACCTTTGT
LOC_Os08g39310
Os.12517.1.A1_at--1031--4451Chr08:24709139..24709163 (25 bp)
GCCTCTTACATTGTTAGTGCTCTTG
LOC_Os08g39310
Os.12517.1.A1_at--1071--6751Chr08:24709163..24709187 (25 bp)
GTTAAAAGGACACCTGTGCTCTCCC
LOC_Os08g39310
Os.12517.1.A1_at--669--7311Chr08:24709178..24709202 (25 bp)
GTGCTCTCCCTGTATTATGTTGTCG
LOC_Os08g39310
Target Sequence 
GAAAGTCTAACTGCCGTGAGTGTTTCGGAGTTGCTGTCACAACACCTTTTCAAGCAACCTAACAAGCTCTAACTGATGAA
TCGTCTTACTGGACTCTAGTTGGTCTAACANCCCTGGTAGTAGGCGCTGATGAAACAACAGAAAATGCTGAAAGTGTTTA
TTCTATGCTTTGTATCCATCAAACTGATTTACTTATGAGAAAAAGGCTGTAGGCTAATCTCTTCACAGTAGCAAGGAAAA
AGAATGATAGTTGTTGCATATTATGTAGTCTTGAGTCTTCTTGGAAGAGTCACATGTGGTAGGCTATCTTGAATTTCTAG
CTTGTTAAATACTGAGTAGAAAGCAGCACCGAAGCAAAGTTAAAGCTGATGAACTTTGCTTGATGTAAAAATCAGCAAGC
ATAGGTGCGTTCTATGGTAAGTAGTTGCTTTCACCTTTGTTGCTTGAAAGCCTCTTACATTGTTAGTGCTCTTGTTAAAA
GGACACCTGTGCTCTCCCTGTATTATGTTGTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12517.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis