Browse Element(s) Details


Os.12535.1.S1_at

Description gb:AK061237.1
DB_XREF= gi:32971255
TID=Os.12535.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.12535 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0690B02.4 (P0690B02.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-211-C03, full insert sequence.
FL= gb:AK061237.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5223011/11Phosphatase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52150OsAffx.11571.1.S1_at11/111+30327567..30328222hypothetical protein
LOC_Os01g52160Os.34537.1.S1_at11/111+30330379..30332760copper-binding family protein, putative, expressed
LOC_Os01g52160Os.34537.2.S1_x_at7/111+30330379..30332760copper-binding family protein, putative, expressed
LOC_Os01g52170Os.27417.1.S1_at11/111+30335128..30338941Mrp protein homolog, putative, expressed
LOC_Os01g52180NANA1+30340881..30341987lipase class 3 family protein, putative, expressed
LOC_Os01g52190OsAffx.23760.1.S1_at11/111+30342781..30344121Eukaryotic aspartyl protease family protein
LOC_Os01g52200OsAffx.2310.1.S1_at11/111+30344628..30346826mitochondrial ATP synthase g subunit family protein, putative
LOC_Os01g52214Os.11071.1.A1_at10/111+30347801..30350656NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os01g52214Os.11071.1.A1_s_at7/111+30347801..30350656NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os01g52214OsAffx.25300.1.S1_at2/111+30347801..30350656NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os01g52214Os.35752.3.S1_x_at2/111+30347801..30350656NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os01g52230Os.12535.1.S1_at11/111+30352100..30353312Phosphatase, putative, expressed
LOC_Os01g52240Os.28216.1.S1_a_at11/111+30357845..30359017Chlorophyll a-b binding protein 2, chloroplast precursor, putative, expressed
LOC_Os01g52240Os.28216.3.S1_x_at8/111+30357845..30359017Chlorophyll a-b binding protein 2, chloroplast precursor, putative, expressed
LOC_Os01g52250Os.17856.1.S1_a_at11/111+30359029..30368272glycogen/starch synthases, ADP-glucose type family protein, expressed
LOC_Os01g52260Os.11335.3.S1_x_at11/111+30369386..30370631serine O-acetyltransferase family protein, expressed
LOC_Os01g52270OsAffx.23761.2.S1_x_at11/111+30375076..30376746NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12535.1.S1_at--463--5791Chr01:30352625..30352649 (25 bp)
GACGACTTCATGATGCCACGCAGGG
LOC_Os01g52230
Os.12535.1.S1_at--427--5731Chr01:30352454..30352478 (25 bp)
GACTGCAAGCTCGAGTCGTTGCCGG
LOC_Os01g52230
Os.12535.1.S1_at--442--4991Chr01:30352411..30352435 (25 bp)
GCATGCCCATGACGCTCCGGATCAA
LOC_Os01g52230
Os.12535.1.S1_at--635--371Chr01:30352391..30352415 (25 bp)
ATCAAGAACTGATCAATGGCGGCGA
LOC_Os01g52230
Os.12535.1.S1_at--364--871Chr01:30352376..30352400 (25 bp)
ATGGCGGCGACGAACGTACGCATGA
LOC_Os01g52230
Os.12535.1.S1_at--298--4031Chr01:30352362..30352386 (25 bp)
CGTACGCATGATTTCGAGCGCGAAA
LOC_Os01g52230
Os.12535.1.S1_at--225--4571Chr01:30352345..30352369 (25 bp)
GCGCGAAACGGCTAGCTCGAACAAT
LOC_Os01g52230
Os.12535.1.S1_at--47--3731Chr01:30352265..30352289 (25 bp)
CTACGCGTGATTGAGCCTGCGATTA
LOC_Os01g52230
Os.12535.1.S1_at--1094--8311Chr01:30352235..30352259 (25 bp)
GGCTCATTGTATCTTGTCCGATCAA
LOC_Os01g52230
Os.12535.1.S1_at--125--2431Chr01:30352203..30352227 (25 bp)
AAAACATTTGGCTTGGCTCTCTCTC
LOC_Os01g52230
Os.12535.1.S1_at--669--3611Chr01:30352192..30352216 (25 bp)
CTTGGCTCTCTCTCTATGAGATGTA
LOC_Os01g52230
Target Sequence 
GACGACTTCATGATGCCACGCAGGGGCTTCCCCGTGTGGGAGCTCATCTGCGAGGACCCGTCGCTGCTCCANGCGGAGGT
GCACNCGTGGGCCGACGGCGCCGAGATGGAGGAGACGCTGCTGCGGCTGGTCGGCAGGGTGCTCCTCGAGGAGAGGAACC
TGCCGCCGCTCGACTGCAAGCTCGAGTCGTTGCCGGCCGTCGCCGTGCAGGACGGCATGCCCATGACGCTCCGGATCAAG
AACTGATCAATGGCGGCGACGAACGTACGCATGATTTCGAGCGCGAAACGGCTAGCTCGAACAATGTGTGTGTGAGGATT
GCGATACGGGTATAATTTTAACTATTGACTGATTTTTNCGCTACGCGTGATTGAGCCTGCGATTAGTAGAGGCTCATTGT
ATCTTGTCCGATCAATTGAAGTAAAACATTTGGCTTGGCTCTCTCTCTATGAGATGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12535.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis