Browse Element(s) Details


Os.12560.1.S1_s_at

Description gb:AK065190.1
DB_XREF= gi:32975208
TID=Os.12560.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12560 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002E08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002E08, full insert sequence.
FL= gb:AK065190.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0206011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g02020Os.1637.1.S1_at10/111+545947..549427acetyl-CoA acetyltransferase, cytosolic 2, putative, expressed
LOC_Os01g02040Os.11832.1.S1_at11/111+550827..554817transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g02050Os.49998.1.S1_at11/111+558890..568894Phosphoenolpyruvate carboxylase 4, putative, expressed
LOC_Os01g02050Os.33406.1.A1_x_at11/111+558890..568894Phosphoenolpyruvate carboxylase 4, putative, expressed
LOC_Os01g02060Os.12560.1.S1_s_at11/111+573291..576371Leucine Rich Repeat family protein, expressed
LOC_Os01g02070OsAffx.22936.1.S1_at9/111+582765..583247pectinesterase inhibitor domain containing protein
LOC_Os01g02080Os.35815.1.S1_at11/111+583225..584558peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein, putative, expressed
LOC_Os01g02090Os.1644.1.S1_at11/111+585671..590539expressed protein
LOC_Os01g02100Os.35391.2.S1_x_at11/111+595092..598259hAT family dimerisation domain containing protein, expressed
LOC_Os01g02100Os.35391.1.S1_at11/111+595092..598259hAT family dimerisation domain containing protein, expressed
LOC_Os01g02110Os.30617.1.S1_at11/111+600445..602445Helix-loop-helix DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007165biological_processsignal transduction
GO:0008356biological_processasymmetric cell division
GO:0009860biological_processpollen tube growth
GO:0010103biological_processstomatal complex morphogenesis
GO:0016324cellular_componentapical plasma membrane
GO:0031225cellular_componentanchored to membrane
GO:0004872molecular_functionreceptor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12560.1.S1_s_at--505--9851Chr01:573799..573823 (25 bp)
TTCGCGTCGTGGGACAACCCGGGCT
LOC_Os01g02060
Os.12560.1.S1_s_at--954--2611Chr01:573784..573808 (25 bp)
AACCCGGGCTTGTGCTACAGCAATG
LOC_Os01g02060
Os.12560.1.S1_s_at--1096--7291Chr01:573773..573797 (25 bp)
GTGCTACAGCAATGCCGCGGTGGAC
LOC_Os01g02060
Os.12560.1.S1_s_at--1042--7151Chr01:573596..573620 (25 bp)
GTCTCTCTTGTAGCCAAAGACAGAC
LOC_Os01g02060
Os.12560.1.S1_s_at--784--1411Chr01:573579..573603 (25 bp)
AGACAGACACCAACTTTCAGAATCT
LOC_Os01g02060
Os.12560.1.S1_s_at--649--6571Chr01:573520..573544 (25 bp)
GATTCTCTCTTAGTTTAGCTTGGCT
LOC_Os01g02060
Os.12560.1.S1_s_at--591--10071Chr01:573486..573510 (25 bp)
TAGTGCTGTTCTTACTTTTGGCTCT
LOC_Os01g02060
Os.12560.1.S1_s_at--29--9531Chr01:573464..573488 (25 bp)
TCTCTTTTTTGGGTGTTTTTCTGAT
LOC_Os01g02060
Os.12560.1.S1_s_at--107--7371Chr01:573383..573407 (25 bp)
GTGACGAGTACTAGCTTGGTTGTTT
LOC_Os01g02060
Os.12560.1.S1_s_at--606--8611Chr01:573354..573378 (25 bp)
TGGGTGTAATTAGCATGTTTCTCAT
LOC_Os01g02060
Os.12560.1.S1_s_at--279--10171Chr01:573297..573321 (25 bp)
TATAAGGTAAACTGCTCTCCTTGTC
LOC_Os01g02060
Target Sequence 
TTCGCGTCGTGGGACAACCCGGGCTTGTGCTACAGCAATGCCGCGGTGGACGCGGCGCACGCGCCGCNGGGNGGTGACGG
TGTGCAAGGTGGCCGGCGGCGTGGGGGACGGGAGGAAGCCGGAGGCGAGCTCCAGCCTCATGGCCACCTCGTCTGCTTCC
AACCTCATCAATGGCTTCTGCTTNCTTCTTGTGGATGGTGGCCANCGTCTCTCTTGTAGCCAAAGACAGACACCAACTTT
CAGAATCTTCAGATAGATGGAACAACATGAAATGAAGAAACTGATTCTCTCTTAGTTTAGCTTGGCTAGTGACTAGTAGT
GCTGTTCTTACTTTTGGCTCTCTTTTTTGGGTGTTTTTCTGATGATGGAAAAGGAAGAAATCCTGGTGGTCACAGTAAAC
ACTAGTCTGAAACTGTGTAGTGACGAGTACTAGCTTGGTTGTTTTTTTTGGGTGTAATTAGCATGTTTCTCATGTGATGT
TTAATTACGGGAAGTGGATAATGGATATAAGGTAAACTGCTCTCCTTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12560.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis