Browse Element(s) Details


Os.12579.1.S1_at

Description gb:AK059654.1
DB_XREF= gi:32969672
TID=Os.12579.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12579 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033096I21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-031-C10, full insert sequence.
FL= gb:AK102536.1 gb:AK059654.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0783010/11Acetyl-CoA acetyltransferase, cytosolic 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g07800Os.32502.1.S1_at11/119+3948848..3952247C2 domain-containing protein, putative, expressed
LOC_Os09g07800Os.50043.1.A1_at1/119+3948848..3952247C2 domain-containing protein, putative, expressed
LOC_Os09g07810OsAffx.6195.1.S1_at10/119+3955029..3956133hypothetical protein
LOC_Os09g07820OsAffx.6196.1.S1_at11/119+3958894..39638943' exoribonuclease family, domain 2 containing protein, expressed
LOC_Os09g07820Os.16226.1.S1_s_at10/119+3958894..39638943' exoribonuclease family, domain 2 containing protein, expressed
LOC_Os09g07830Os.12579.1.S1_at10/119+3969052..3974826Acetyl-CoA acetyltransferase, cytosolic 1, putative, expressed
LOC_Os09g07840OsAffx.22403.1.S1_at1/119+3977157..3979103retrotransposon protein, putative, unclassified
LOC_Os09g07850NANA9+3982802..3992543retrotransposon protein, putative, unclassified
LOC_Os09g07860NANA9+3996128..3998649transposon protein, putative, unclassified
LOC_Os09g07870NANA9+3998931..4001868retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0003985molecular_functionacetyl-CoA C-acetyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12579.1.S1_at--937--9251Chr09:3973900..3973924 (25 bp)
TCCTCTTGGATGCAGTGGTGCTCGA
LOC_Os09g07830
Os.12579.1.S1_at--350--7311Chr09:3973917..3973941 (25 bp)
GTGCTCGAATTTTGGTCACCCTGCT
LOC_Os09g07830
Os.12579.1.S1_at--74--9691NONE
TCACCCTGCTTGGTGTTCTTAGGGA
NONE
Os.12579.1.S1_at--473--9511Chr09:3974269..3974293 (25 bp)
TCTCGTTCTCGAGCTTGCATAAGAA
LOC_Os09g07830
Os.12579.1.S1_at--278--10591Chr09:3974411..3974435 (25 bp)
TTCTCCAGGACGTTTGTGTACTCTA
LOC_Os09g07830
Os.12579.1.S1_at--375--9491Chr09:3974449..3974473 (25 bp)
TCTGCTTTAGCTGTTTGGACATTCT
LOC_Os09g07830
Os.12579.1.S1_at--1013--5051Chr09:3974579..3974603 (25 bp)
GCAGCAGTCTTTAGGCTCAATCAAT
LOC_Os09g07830
Os.12579.1.S1_at--934--5391Chr09:3974659..3974683 (25 bp)
GAAGCTTTTGTGTTAGCCAGCACAT
LOC_Os09g07830
Os.12579.1.S1_at--1084--9371Chr09:3974703..3974727 (25 bp)
TCGAGAGGCCTATCTACACAGGAAT
LOC_Os09g07830
Os.12579.1.S1_at--812--2331Chr09:3974740..3974764 (25 bp)
AAAGATGCTCGTAGGGCACCTGAGT
LOC_Os09g07830
Os.12579.1.S1_at--200--7611Chr09:3974753..3974777 (25 bp)
GGGCACCTGAGTTCACTCTTTGAAA
LOC_Os09g07830
Target Sequence 
TCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGTGTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTG
CTGGTGTTTGCAATGGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTTNNNNNNNNNNNGTGAT
CCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGATTTTCTGCTTTAGCTGTTTGGACATTCTTTTATCT
TAATAATTGGGTAATAAAGTGTGTTTGTGGTGCCAAAGTTAATCTGGTTTGTACTTTTTGTCAAAATATTTCTCCTGTAA
GTGGTAATAATGTGGTATGCAGCAGTCTTTAGGCTCAATCAATTGTCTATAGAAGTTCTAGATTCTTTTTTCTGCTACAC
AACTGGTAACGCTCAAATGAAGCTTTTGTGTTAGCCAGCACATTTTTAGTGGACTATATCTATCGAGAGGCCTATCTACA
CAGGAATTATGGACATTTGAAAGATGCTCGTAGGGCACCTGAGTTCACTCTTTGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12579.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis