Browse Element(s) Details


Os.32502.1.S1_at

Description gb:AK061218.1
DB_XREF= gi:32971236
TID=Os.32502.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32502 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-004-C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-210-E07, full insert sequence.
FL= gb:AK061218.1 gb:AK104010.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0780011/11C2 domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g07760NANA9+3923525..3926665retrotransposon protein, putative, unclassified
LOC_Os09g07770OsAffx.19796.1.S1_x_at2/119+3930419..3931151hypothetical protein
LOC_Os09g07780Os.40577.1.S1_at10/119+3934220..3937411PPR986-12, putative, expressed
LOC_Os09g07790NANA9+3942821..3943273hypothetical protein
LOC_Os09g07800Os.32502.1.S1_at11/119+3948848..3952247C2 domain-containing protein, putative, expressed
LOC_Os09g07800Os.50043.1.A1_at1/119+3948848..3952247C2 domain-containing protein, putative, expressed
LOC_Os09g07810OsAffx.6195.1.S1_at10/119+3955029..3956133hypothetical protein
LOC_Os09g07820OsAffx.6196.1.S1_at11/119+3958894..39638943' exoribonuclease family, domain 2 containing protein, expressed
LOC_Os09g07820Os.16226.1.S1_s_at10/119+3958894..39638943' exoribonuclease family, domain 2 containing protein, expressed
LOC_Os09g07830Os.12579.1.S1_at10/119+3969052..3974826Acetyl-CoA acetyltransferase, cytosolic 1, putative, expressed
LOC_Os09g07840OsAffx.22403.1.S1_at1/119+3977157..3979103retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006886biological_processintracellular protein transport
GO:0005794cellular_componentGolgi apparatus
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0005543molecular_functionphospholipid binding
GO:0008060molecular_functionARF GTPase activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32502.1.S1_at--557--8771Chr09:3951676..3951700 (25 bp)
TGTTCGACTGGGACCGGTTCAAGTA
LOC_Os09g07800
Os.32502.1.S1_at--127--2211Chr09:3951823..3951847 (25 bp)
ACAACTGCCTCATGTGCGACAGCTT
LOC_Os09g07800
Os.32502.1.S1_at--1103--5631Chr09:3951840..3951864 (25 bp)
GACAGCTTCGTGACGTACGCCGACG
LOC_Os09g07800
Os.32502.1.S1_at--817--3331Chr09:3951926..3951950 (25 bp)
CACTGTCAAGTGGATCGATGCGAAC
LOC_Os09g07800
Os.32502.1.S1_at--498--2291Chr09:3951962..3951986 (25 bp)
AAATGGGACTCCGTGTGAATGCTGT
LOC_Os09g07800
Os.32502.1.S1_at--557--7351Chr09:3951976..3952000 (25 bp)
GTGAATGCTGTCTGATCTAAATCTG
LOC_Os09g07800
Os.32502.1.S1_at--793--10291Chr09:3952004..3952028 (25 bp)
TTTCCAGACAGTTCTAACAGGCATA
LOC_Os09g07800
Os.32502.1.S1_at--878--9991Chr09:3952033..3952057 (25 bp)
TAGCGTGTGCGTGCATGTTCAGAAT
LOC_Os09g07800
Os.32502.1.S1_at--404--10091Chr09:3952124..3952148 (25 bp)
TAGGAACGCAATGTGTTCTCCCCAC
LOC_Os09g07800
Os.32502.1.S1_at--824--4351Chr09:3952145..3952169 (25 bp)
CCACTCTTTTTAGCCCATTCTAGAG
LOC_Os09g07800
Os.32502.1.S1_at--964--6011Chr09:3952167..3952191 (25 bp)
GAGATAAGTACCCTTTTTCTCCAAT
LOC_Os09g07800
Target Sequence 
TGTTCGACTGGGACCGGTTCAAGTACGACGATAAAATGGGGCACGCGTTTCTTGAGCTGCAGCCGGTGGCCGCGGCGGCG
AAGCTGCGGCGTGCGCTGCGGCTGACGACGGGGGAGACCAAGCTCCGGAAGGTTGCCGCCAGCGTCGACAACTGCCTCAT
GTGCGACAGCTTCGTGACGTACGCCGACGGTGAGATCGTGCTCGACGCCAGGCTGCGGCTGCGCGACGTCGAGTCCGGCG
AGCTGTTCGTCACTGTCAAGTGGATCGATGCGAACGCCAAGTGAGAAAATGGGACTCCGTGTGAATGCTGTCTGATCTAA
ATCTGAAATTTCCAGACAGTTCTAACAGGCATAGTATTAGCGTGTGCGTGCATGTTCAGAATGTTTTTGTGCTTTTCTTT
TTTAATGAACGATCGGGAAAGTAGGAAACTCTAATTATTGTTTGGAAATAGGAACGCAATGTGTTCTCCCCACTCTTTTT
AGCCCATTCTAGAGATAAGTACCCTTTTTCTCCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32502.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis