Browse Element(s) Details


Os.16226.1.S1_s_at

Description gb:BI801996
DB_XREF= gi:16574700
DB_XREF=H067B11
CLONE=H067B11
TID=Os.16226.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.16226 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein pir:T47954 (A.thaliana) T47954 exonuclease RRP41 (imported) - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0782010/113' exoribonuclease family, domain 2 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g07780Os.40577.1.S1_at10/119+3934220..3937411PPR986-12, putative, expressed
LOC_Os09g07790NANA9+3942821..3943273hypothetical protein
LOC_Os09g07800Os.32502.1.S1_at11/119+3948848..3952247C2 domain-containing protein, putative, expressed
LOC_Os09g07800Os.50043.1.A1_at1/119+3948848..3952247C2 domain-containing protein, putative, expressed
LOC_Os09g07810OsAffx.6195.1.S1_at10/119+3955029..3956133hypothetical protein
LOC_Os09g07820OsAffx.6196.1.S1_at11/119+3958894..39638943' exoribonuclease family, domain 2 containing protein, expressed
LOC_Os09g07820Os.16226.1.S1_s_at10/119+3958894..39638943' exoribonuclease family, domain 2 containing protein, expressed
LOC_Os09g07830Os.12579.1.S1_at10/119+3969052..3974826Acetyl-CoA acetyltransferase, cytosolic 1, putative, expressed
LOC_Os09g07840OsAffx.22403.1.S1_at1/119+3977157..3979103retrotransposon protein, putative, unclassified
LOC_Os09g07850NANA9+3982802..3992543retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006396biological_processRNA processing
GO:0000175molecular_function3'-5'-exoribonuclease activity
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16226.1.S1_s_at--510--7311Chr09:3961320..3961344 (25 bp)
GTGCTGGTTATCTGTGTTCTACTCC
LOC_Os09g07820
Os.16226.1.S1_s_at--634--6731Chr09:3961335..3961441 (25 bp)
GTTCTACTCCTTTGCTTGATCTGAA
LOC_Os09g07820
Os.16226.1.S1_s_at--961--5531Chr09:3961770..3961794 (25 bp)
GAAACTGTAATGGACCTTGCAATTG
LOC_Os09g07820
Os.16226.1.S1_s_at--1063--2011NONE
ACTACATCCGAGAGGTGCTATTGGA
NONE
Os.16226.1.S1_s_at--982--6091Chr09:3963627..3963651 (25 bp)
GAGTGCCAGCGTGGTTAGTTAACGC
LOC_Os09g07820
Os.16226.1.S1_s_at--1110--1191Chr09:3963643..3963667 (25 bp)
AGTTAACGCTAGTAGGTGATGCCCT
LOC_Os09g07820
Os.16226.1.S1_s_at--528--1051Chr09:3963656..3963680 (25 bp)
AGGTGATGCCCTTCAATTGAGCCAC
LOC_Os09g07820
Os.16226.1.S1_s_at--94--5871Chr09:3963674..3963698 (25 bp)
GAGCCACCTTTGACTGGTCTTGTGA
LOC_Os09g07820
Os.16226.1.S1_s_at--590--7131Chr09:3963690..3963714 (25 bp)
GTCTTGTGACAAGCAAATTCCCTAG
LOC_Os09g07820
Os.16226.1.S1_s_at--857--5111Chr09:3963702..3963726 (25 bp)
GCAAATTCCCTAGAGATTCAAAGAT
LOC_Os09g07820
Os.16226.1.S1_s_at--1004--10311Chr09:3963803..3963827 (25 bp)
TTTCTCTGCCAGATATTTGCCATCA
LOC_Os09g07820
Target Sequence 
GTGCTGGTTATCTGTGTTCTACTCCTTTGCTTGATCTGAATNATATAGANGNNAGTGCTGGAGGTCCAGATGTCNCTGTT
GGCTTTCTTACNAAGATGNNCNAAGTNACTNTTCNGCAGATGGATGCAAAATTACCNATGGATACATNTGAAACTGTAAT
GGACCTTGCAATTGAAGGCTGCAAAGCTATTGCNANACTACATCCGAGAGGTGCTATTGGAGAACACANAGACGGCTGGA
GTGCCAGCGTGGTTAGTTAACGCTAGTAGGTGATGCCCTTCAATTGAGCCACCTTTGACTGGTCTTGTGACAAGCAAATT
CCCTAGAGATTCAAAGATTAATGGTGCGATCCAAATACATAATGAAAGATGGTCAACANATCACTAGAATTTAGATTATG
CTGATTAAGAACNATTTCTCTGCCAGATATTTGCCATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16226.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis