Browse Element(s) Details


OsAffx.6196.1.S1_at

Description tigr:9637.m00546
TID=OsAffx.6196.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=exonuclease RRP41 (imported) - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0782011/113' exoribonuclease family, domain 2 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g07780Os.40577.1.S1_at10/119+3934220..3937411PPR986-12, putative, expressed
LOC_Os09g07790NANA9+3942821..3943273hypothetical protein
LOC_Os09g07800Os.32502.1.S1_at11/119+3948848..3952247C2 domain-containing protein, putative, expressed
LOC_Os09g07800Os.50043.1.A1_at1/119+3948848..3952247C2 domain-containing protein, putative, expressed
LOC_Os09g07810OsAffx.6195.1.S1_at10/119+3955029..3956133hypothetical protein
LOC_Os09g07820OsAffx.6196.1.S1_at11/119+3958894..39638943' exoribonuclease family, domain 2 containing protein, expressed
LOC_Os09g07820Os.16226.1.S1_s_at10/119+3958894..39638943' exoribonuclease family, domain 2 containing protein, expressed
LOC_Os09g07830Os.12579.1.S1_at10/119+3969052..3974826Acetyl-CoA acetyltransferase, cytosolic 1, putative, expressed
LOC_Os09g07840OsAffx.22403.1.S1_at1/119+3977157..3979103retrotransposon protein, putative, unclassified
LOC_Os09g07850NANA9+3982802..3992543retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006396biological_processRNA processing
GO:0000175molecular_function3'-5'-exoribonuclease activity
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6196.1.S1_at--1085--791Chr09:3961235..3961254 (20 bp)
ATGGTGGTACAAGGGCTGCATGCAT
LOC_Os09g07820
OsAffx.6196.1.S1_at--215--4991Chr09:3961247..3961271 (25 bp)
GCATGCATCAATGCTGCTACATTAG
LOC_Os09g07820
OsAffx.6196.1.S1_at--298--631Chr09:3961257..3961281 (25 bp)
ATGCTGCTACATTAGCACTTGCAGA
LOC_Os09g07820
OsAffx.6196.1.S1_at--528--5111Chr09:3961271..3961295 (25 bp)
GCACTTGCAGATGCTGGGATTCCCA
LOC_Os09g07820
OsAffx.6196.1.S1_at--503--3631Chr09:3961274..3961298 (25 bp)
CTTGCAGATGCTGGGATTCCCATGC
LOC_Os09g07820
OsAffx.6196.1.S1_at--1130--5191Chr09:3961439..3961463 (25 bp)
GAATTATATAGAAGACAGTGCTGGA
LOC_Os09g07820
OsAffx.6196.1.S1_at--169--8311Chr09:3961482..3961506 (25 bp)
GGCTTTCTTACAAAGATGGACAAAG
LOC_Os09g07820
OsAffx.6196.1.S1_at--64--6251Chr09:3961496..3961520 (25 bp)
GATGGACAAAGTTACTCTTCTGCAG
LOC_Os09g07820
OsAffx.6196.1.S1_at--482--2831Chr09:3961504..3961747 (25 bp)
AAGTTACTCTTCTGCAGATGGATGC
LOC_Os09g07820
OsAffx.6196.1.S1_at--338--911Chr09:3961796..3961820 (25 bp)
AGGCTGCAAAGCTATCGCAAACTAC
LOC_Os09g07820
OsAffx.6196.1.S1_at--921--4851Chr09:3961806..3961830 (25 bp)
GCTATCGCAAACTACATCCGAGAGG
LOC_Os09g07820
Target Sequence 
ATGGTGGTACAAGGGCTGCATGCATCAATGCTGCTACATTAGCACTTGCAGATGCTGGGATTCCCATGCGAGACATTGTT
ACATCTTGCAGTGCTGGTTATCTGTGTTCTACTCCTTTGCTTGATCTGAATTATATAGAAGACAGTGCTGGAGGTCCAGA
TGTCACTGTTGGCTTTCTTACAAAGATGGACAAAGTTACTCTTCTGCAGATGGATGCAAAATTACCAATGGATACATTTG
AAACTGTAATGGACCTTGCAATTGAAGGCTGCAAAGCTATCGCAAACTACATCCGAGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6196.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis