Browse Element(s) Details


Os.12583.1.S1_at

Description gb:AK120241.1
DB_XREF= gi:37989864
TID=Os.12583.1
CNT=22
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12583 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) chloroplast import-associated channel protein homolog (OJ1261C08.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013044F20, full insert sequence.
FL= gb:AK120241.1 gb:AK062000.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1644011/11chloroplastic outer envelope membrane protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g16400Os.5247.1.S1_at11/113+9026627..9030507expressed protein
LOC_Os03g16400Os.799.2.S1_x_at4/113+9026627..9030507expressed protein
LOC_Os03g16410NANA3+9030906..9031373hypothetical protein
LOC_Os03g16420OsAffx.20370.1.S1_at11/113+9041840..9042763retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g16430Os.27006.1.S1_at11/113+9043907..9047100Sigma-70 region 3 family protein, expressed
LOC_Os03g16440Os.12583.1.S1_at11/113+9047443..9053002chloroplastic outer envelope membrane protein, putative, expressed
LOC_Os03g16450Os.12583.3.S1_x_at11/113+9053364..9055860pentatricopeptide, putative, expressed
LOC_Os03g16450Os.12583.2.S1_at11/113+9053364..9055860pentatricopeptide, putative, expressed
LOC_Os03g16460Os.38256.1.S1_at11/113+9055024..9058460HEAT repeat family protein, expressed
LOC_Os03g16470Os.27598.1.S1_at11/113+9058653..9060595expressed protein
LOC_Os03g16470Os.27598.3.S1_at11/113+9058653..9060595expressed protein
LOC_Os03g16470Os.27598.1.S1_a_at11/113+9058653..9060595expressed protein
LOC_Os03g16470Os.27598.2.S1_at10/113+9058653..9060595expressed protein
LOC_Os03g16480Os.27651.1.S1_at11/113+9063531..9065005Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g16490NANA3+9068830..9071493hypothetical protein
LOC_Os03g16500Os.32109.1.S1_at11/113+9075454..9084043Eukaryotic aspartyl protease family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009658biological_processchloroplast organization and biogenesis
GO:0009707cellular_componentchloroplast outer membrane
GO:0010006cellular_componentToc complex
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12583.1.S1_at--448--1251Chr03:9052441..9052465 (25 bp)
AGATCACAATGCTGGTACTGGAACA
LOC_Os03g16440
Os.12583.1.S1_at--325--2491Chr03:9052462..9052486 (25 bp)
AACAGTTTTCTTCAGATTTGGCGAG
LOC_Os03g16440
Os.12583.1.S1_at--748--2491Chr03:9052497..9052521 (25 bp)
AACAGTTCAGTCAACCACCAGTGGA
LOC_Os03g16440
Os.12583.1.S1_at--629--7571Chr03:9052539..9052563 (25 bp)
GGGCTGTTTAGCTCATTTGCAGGCA
LOC_Os03g16440
Os.12583.1.S1_at--1135--5251Chr03:9052566..9052590 (25 bp)
GAATCCTGAAGCACCTATGCATGTT
LOC_Os03g16440
Os.12583.1.S1_at--383--7471Chr03:9052591..9052615 (25 bp)
GTGTGAACCGTTGATGTTTCTGGAT
LOC_Os03g16440
Os.12583.1.S1_at--731--8171Chr03:9052628..9052652 (25 bp)
GGAACTTCTGTTCCCGCTGAAATAA
LOC_Os03g16440
Os.12583.1.S1_at--919--5171Chr03:9052716..9052740 (25 bp)
GCAAGATTTGATCGCAGTCTGGTGC
LOC_Os03g16440
Os.12583.1.S1_at--1094--1451Chr03:9052750..9052774 (25 bp)
AGAAGTACTTGCTCCTGTCATTTTC
LOC_Os03g16440
Os.12583.1.S1_at--412--9531Chr03:9052825..9052849 (25 bp)
TCTAGCAGTTTTGTCCCATATTCGG
LOC_Os03g16440
Os.12583.1.S1_at--821--2531Chr03:9052884..9052908 (25 bp)
AACTACTCCTATCTGTTGCTGCATT
LOC_Os03g16440
Target Sequence 
AGATCACAATGCTGGTACTGGAACAGTTTTCTTCAGATTTGGCGAGAGATTTTGAAAACAGTTCAGTCAACCACCAGTGG
ATAATAGATCATTGAGGTGGGCTGTTTAGCTCATTTGCAGGCATAGAATCCTGAAGCACCTATGCATGTTGTGTGAACCG
TTGATGTTTCTGGATTCAACTTGAATAGGAACTTCTGTTCCCGCTGAAATAATGAAGCAATGTTGCTTCCATCCAAAGTG
AGAAGTTAGCTTTCAGGATTAGTATTGTGTAGGAAGCAAGATTTGATCGCAGTCTGGTGCTNCTTTGACAGAAGTACTTG
CTCCTGTCATTTTCAGTGCTAGAGTTTTTTTGTTTTGTTCTTTTGCTTTGGTTAGATAAAGTGTTCTAGCAGTTTTGTCC
CATATTCGGGCTATAAATTTTAGTTGAACTATGGTAAGTTGGTAACTACTCCTATCTGTTGCTGCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12583.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis