Browse Element(s) Details


Os.12603.1.S1_at

Description gb:AK104148.1
DB_XREF= gi:32989357
TID=Os.12603.1
CNT=64
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.12603 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative Ubiquitin carrier protein UBC7 (P0031D11.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-208-B05, full insert sequence.
FL= gb:AK112030.1 gb:AK099038.1 gb:AK104148.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6224411/11Ubiquitin-conjugating enzyme E2 7, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62170OsAffx.21761.1.S1_x_at11/111+36320830..36322782hypothetical protein
LOC_Os01g62170OsAffx.23890.4.S1_x_at10/111+36320830..36322782hypothetical protein
LOC_Os01g62170OsAffx.21761.1.S1_at9/111+36320830..36322782hypothetical protein
LOC_Os01g62170OsAffx.23890.2.S1_x_at6/111+36320830..36322782hypothetical protein
LOC_Os01g62170OsAffx.23890.2.S1_at5/111+36320830..36322782hypothetical protein
LOC_Os01g62180NANA1+36322908..36323828hypothetical protein
LOC_Os01g62190Os.10411.1.S1_at11/111+36328091..36328950Zinc finger, C2H2 type family protein, expressed
LOC_Os01g62200Os.38316.1.S1_at11/111+36329408..36331950expressed protein
LOC_Os01g62200Os.38316.1.S1_s_at10/111+36329408..36331950expressed protein
LOC_Os01g62200Os.27407.1.A1_at6/111+36329408..36331950expressed protein
LOC_Os01g62210Os.47966.1.S1_at10/111+36334251..36336745ribosomal protein L17 containing protein, expressed
LOC_Os01g62210OsAffx.21760.1.S1_at1/111+36334251..36336745ribosomal protein L17 containing protein, expressed
LOC_Os01g62220OsAffx.11696.1.S1_at11/111+36338499..36339869pentatricopeptide, putative
LOC_Os01g62230Os.19784.1.S1_at10/111+36340890..36341546Histone H2B, putative, expressed
LOC_Os01g62244Os.12603.1.S1_at11/111+36344054..36350317Ubiquitin-conjugating enzyme E2 7, putative, expressed
LOC_Os01g62244Os.51168.1.S1_at1/111+36344054..36350317Ubiquitin-conjugating enzyme E2 7, putative, expressed
LOC_Os01g62244Os.52300.1.S1_at1/111+36344054..36350317Ubiquitin-conjugating enzyme E2 7, putative, expressed
LOC_Os01g62260Os.28139.1.S1_at10/111+36356643..36357818Osmotin-like protein precursor, putative, expressed
LOC_Os01g62280OsAffx.21758.1.S1_at9/111+36365678..36366068hypothetical protein
LOC_Os01g62290Os.46024.1.S1_at11/111+36366569..36370066Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os01g62290Os.57477.1.S1_x_at1/111+36366569..36370066Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os01g62300Os.7747.1.S1_at11/111+36371031..36373369SLT1 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0009650biological_processUV protection
GO:0005622cellular_componentintracellular
GO:0004840molecular_functionubiquitin conjugating enzyme activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12603.1.S1_at--294--5571Chr01:36344470..36344494 (25 bp)
GAAAGTTAACCATACCACGTCACAT
LOC_Os01g62244
Os.12603.1.S1_at--654--3511Chr01:36344448..36344472 (25 bp)
CATGTGCATGATTTGGCTGTCGATT
LOC_Os01g62244
Os.12603.1.S1_at--895--8331Chr01:36344434..36344458 (25 bp)
GGCTGTCGATTTCCAAATGTCAGTT
LOC_Os01g62244
Os.12603.1.S1_at--872--6651Chr01:36344412..36344436 (25 bp)
GTTGACACTAGCAATTCACTTCTCC
LOC_Os01g62244
Os.12603.1.S1_at--552--8751Chr01:36344382..36344406 (25 bp)
TGTACTTCCCATAGTGTGCCTGGTG
LOC_Os01g62244
Os.12603.1.S1_at--727--7851Chr01:36344349..36344373 (25 bp)
GGTTTCGTCTCCCAGGAAGGCTGAA
LOC_Os01g62244
Os.12603.1.S1_at--106--6871Chr01:36344310..36344334 (25 bp)
GTTTGTCACCTATTCTAAAGCTCTG
LOC_Os01g62244
Os.12603.1.S1_at--778--10191Chr01:36344281..36344305 (25 bp)
TATTTGTGTGGCTTGGGCTGTAAAC
LOC_Os01g62244
Os.12603.1.S1_at--97--8971Chr01:36344244..36344268 (25 bp)
TGAAATACTGCCACTCATCACAATT
LOC_Os01g62244
Os.12603.1.S1_at--864--9171Chr01:36344189..36344213 (25 bp)
TGCCTGATCTGCTAGCTGTTGAACG
LOC_Os01g62244
Os.12603.1.S1_at--711--7871Chr01:36344141..36344165 (25 bp)
GGTTTCAGTCCGTTCTTTGTAATAT
LOC_Os01g62244
Target Sequence 
GAAAGTTAACCATACCACGTCACATGTGCATGATTTGGCTGTCGATTTCCAAATGTCAGTTGACACTAGCAATTCACTTC
TCCCCCTCTGTACTTCCCATAGTGTGCCTGGTGGTGGTCGCGGTTTCGTCTCCCAGGAAGGCTGAATAGCACTGGGACAT
GTTTGTCACCTATTCTAAAGCTCTGGTTGTATTTGTGTGGCTTGGGCTGTAAACGTTGAGAAACTTTGAAATACTGCCAC
TCATCACAATTTTCGTAACAAACGTCATATAAGCAGGCACCTGCCTGATCTGCTAGCTGTTGAACGTTGAAACACAATGT
CTGCAAACTGGTTTCAGTCCGTTCTTTGTAATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12603.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis