Browse Element(s) Details


Os.12657.1.S1_at

Description gb:AK069231.1
DB_XREF= gi:32979255
TID=Os.12657.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12657 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OsPK4-like protein (B1131G08.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023013G02, full insert sequence.
FL= gb:AK069231.1 gb:AK100202.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5544011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g55400Os.10191.1.S1_at11/111+32243445..32245112hypothetical protein
LOC_Os01g55400OsAffx.23800.1.S1_at9/111+32243445..32245112hypothetical protein
LOC_Os01g55410Os.35371.1.S1_at11/111+32246342..32249175expressed protein
LOC_Os01g55410Os.35371.2.S1_x_at8/111+32246342..32249175expressed protein
LOC_Os01g55410Os.35371.2.S1_at5/111+32246342..32249175expressed protein
LOC_Os01g55420Os.13081.1.S1_at11/111+32252714..32253782expressed protein
LOC_Os01g55430Os.31726.1.S1_at11/111+32253984..32256853Tub family protein, expressed
LOC_Os01g55440Os.12657.1.S1_at11/111+32265336..32267032Protein kinase domain containing protein, expressed
LOC_Os01g55450Os.32856.1.S1_at11/111+32270377..32275428protein kinase PK4, putative, expressed
LOC_Os01g55450Os.32856.1.S2_at11/111+32270377..32275428protein kinase PK4, putative, expressed
LOC_Os01g55470OsAffx.10637.1.S1_s_at6/111+32284347..32287867transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g55470OsAffx.10637.3.S1_s_at3/111+32284347..32287867transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g55470OsAffx.10637.4.S1_s_at1/111+32284347..32287867transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g55480OsAffx.32056.1.S1_x_at7/111+32289472..32292625transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g55480OsAffx.32056.1.S1_at3/111+32289472..32292625transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12657.1.S1_at--260--9371Chr01:32265880..32265904 (25 bp)
TCGACATCATCTCGCGGTCGAGAGG
LOC_Os01g55440
Os.12657.1.S1_at--10--2771Chr01:32265608..32265632 (25 bp)
AAGACCGGCGGCGACTCACCGGATT
LOC_Os01g55440
Os.12657.1.S1_at--766--7911Chr01:32265588..32265612 (25 bp)
GGATTTCCGGGACTTCTACAAGCAG
LOC_Os01g55440
Os.12657.1.S1_at--731--3971Chr01:32265581..32265605 (25 bp)
CGGGACTTCTACAAGCAGGAGCTTA
LOC_Os01g55440
Os.12657.1.S1_at--87--8071Chr01:32265564..32265588 (25 bp)
GGAGCTTAAGCCGTCGCTTGGCGAC
LOC_Os01g55440
Os.12657.1.S1_at--229--991Chr01:32265485..32265509 (25 bp)
AGGAGGCCGATCACGAAGCGCTCTT
LOC_Os01g55440
Os.12657.1.S1_at--553--2671Chr01:32265470..32265494 (25 bp)
AAGCGCTCTTGATATGCCGACTCGA
LOC_Os01g55440
Os.12657.1.S1_at--1082--5711Chr01:32265452..32265476 (25 bp)
GACTCGATATCGAATTTTCACGTTG
LOC_Os01g55440
Os.12657.1.S1_at--1005--6631Chr01:32265431..32265455 (25 bp)
GTTGTAATTGATATGCTCTCTGCTT
LOC_Os01g55440
Os.12657.1.S1_at--941--10131Chr01:32265420..32265444 (25 bp)
TATGCTCTCTGCTTATTGATCTCTC
LOC_Os01g55440
Os.12657.1.S1_at--296--10231Chr01:32265407..32265431 (25 bp)
TATTGATCTCTCGTACGTGTTTGTG
LOC_Os01g55440
Target Sequence 
TCGACATCATCTCGCGGTCGAGAGGGCTGGACCTGTCCAAGATGTTCGACGCGGAGGAGCGCAGGTCGGAGGCGCGGTTC
TCCACCAGGGAGACCACGACGGCGATCGTCTCCAAGCTGGAGGAGATCGCGGAGGCGGGGAGGTTCAGCTTCAAGCTGAA
GGAGAAAGGGAGGGTCGAGCTGGAGGGGAGCCAGGACGGGCGGAAGGGCGCGCTGGCCATCGAGGCGGAGATCTTCAAGG
TGGCGCCGGAGGTGCACGTGGTGGAGGTGAGGAAGACCGGCGGCGACTCACCGGATTTCCGGGACTTCTACAAGCAGGAG
CTTAAGCCGTCGCTTGGCGACATGGTGTGGGCGTGGCAGGGAGGTGATTCGCCGCCGCTCGTGCCGGCGGCGGGGAGGAG
GCCGATCACGAAGCGCTCTTGATATGCCGACTCGATATCGAATTTTCACGTTGTAATTGATATGCTCTCTGCTTATTGAT
CTCTCGTACGTGTTTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12657.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis