Browse Element(s) Details


Os.12678.1.S1_at

Description gb:AK070346.1
DB_XREF= gi:32980370
TID=Os.12678.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12678 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023054K20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023054K20, full insert sequence.
FL= gb:AK070346.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5081011/11Calcium-dependent protein kinase, isoform 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g50770Os.54485.1.S1_at2/115+29036431..29038295C4-dicarboxylate transporter/malic acid transport family protein, putative
LOC_Os05g50770Os.5608.3.S1_x_at1/115+29036431..29038295C4-dicarboxylate transporter/malic acid transport family protein, putative
LOC_Os05g50780OsAffx.15186.1.S1_at11/115+29046079..29048554Leucine Rich Repeat family protein
LOC_Os05g50790OsAffx.27396.1.S1_at11/115+29048775..29051796hypothetical protein
LOC_Os05g50800Os.15417.1.S1_at9/115+29054191..29056893expressed protein
LOC_Os05g50810Os.12678.1.S1_at11/115+29057230..29061250Calcium-dependent protein kinase, isoform 2, putative, expressed
LOC_Os05g50820Os.8034.1.S1_at11/115+29066820..29068992expressed protein
LOC_Os05g50830Os.54914.1.S1_at11/115+29071353..29073616Protein kinase domain containing protein, expressed
LOC_Os05g50830OsAffx.27515.1.S1_x_at1/115+29071353..29073616Protein kinase domain containing protein, expressed
LOC_Os05g50840Os.12128.1.S1_at11/115+29073640..29078396Mitochondrial carrier protein, expressed
LOC_Os05g50850NANA5+29080826..29081838hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006499biological_processN-terminal protein myristoylation
GO:0007165biological_processsignal transduction
GO:0004685molecular_functioncalcium- and calmodulin-dependent protein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12678.1.S1_at--500--171Chr05:29058318..29058341 (24 bp)
ATTTTGACAAGGACCACAGCGGGTT
LOC_Os05g50810
Os.12678.1.S1_at--565--1711Chr05:29058214..29058329 (25 bp)
ACCACAGCGGGTTCATAACAGTCGA
LOC_Os05g50810
Os.12678.1.S1_at--289--5411Chr05:29058179..29058203 (25 bp)
GAAGCTCTGACAAAGTACGACATGG
LOC_Os05g50810
Os.12678.1.S1_at--408--4671Chr05:29057540..29057564 (25 bp)
GCGGATGTTTTAAGCCTTTCCTACA
LOC_Os05g50810
Os.12678.1.S1_at--1000--9691Chr05:29057492..29057516 (25 bp)
TCACAAATTCTATATGGTTCCATCT
LOC_Os05g50810
Os.12678.1.S1_at--649--3231Chr05:29057435..29057459 (25 bp)
CAAGAGCAGTTCGTATCGGCGGAAT
LOC_Os05g50810
Os.12678.1.S1_at--241--5191Chr05:29057396..29057420 (25 bp)
GCAAGGCATATTGGACTCGTTATGT
LOC_Os05g50810
Os.12678.1.S1_at--435--751Chr05:29057375..29057399 (25 bp)
ATGTATCATGGTGGATAGCTCTCTG
LOC_Os05g50810
Os.12678.1.S1_at--460--4031Chr05:29057336..29057360 (25 bp)
CGTTTGTGTATGTATGCTTGTGCTT
LOC_Os05g50810
Os.12678.1.S1_at--16--651Chr05:29057323..29057347 (25 bp)
ATGCTTGTGCTTTCTGGCCATATGT
LOC_Os05g50810
Os.12678.1.S1_at--1056--8451Chr05:29057309..29057333 (25 bp)
TGGCCATATGTTTTCTGTCTCTTGA
LOC_Os05g50810
Target Sequence 
ATTTTGACAAGGACCACAGCGGGTTCATAACAGTCGATGAATTGGAAGAAGCTCTGACAAAGTACGACATGGGTGATGAA
NCGACAATTAAAGAAANNANTGNNGNNNNNNNTACNGNNNANGATGGAAGAATTAACTACCAGGAGTTTGTTNCCATGAT
GAAGAACANACAGCCCTGAGATTGTTCCAAATCGACGGCGGATGTTTTAAGCCTTTCCTACAGTTATTGTGAAGTTTTTT
TCCTTTCACAAATTCTATATGGTTCCATCTTAGGGAAGTGAGCATTATCTTTGTAAATGTTACAAGAGCAGTTCGTATCG
GCGGAATTCAATGAAGTATANGCAAGGCATATTGGACTCGTTATGTATCATGGTGGATAGCTCTCTGAAGTGGGTGTGGT
GCGTTTGTGTATGTATGCTTGTGCTTTCTGGCCATATGTTTTCTGTCTCTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12678.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis