Browse Element(s) Details


Os.12683.1.S1_at

Description gb:AF216317.1
DB_XREF= gi:11869996
TID=Os.12683.1
CNT=42
FEA=FLmRNA
TIER=FL+Stack
STK=13
UG=Os.12683 (NCBI UniGene Cluster)
DEF=Oryza sativa MAP kinase 3 mRNA, complete cds.
PROD=MAP kinase 3
FL= gb:AF216317.1 gb:AK119650.1 gb:AF241166.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0548011/11Mitogen-activated protein kinase homolog NTF3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g05440Os.19983.1.S1_x_at11/112+2614245..2618991expressed protein
LOC_Os02g05440Os.19983.2.S1_at11/112+2614245..2618991expressed protein
LOC_Os02g05450Os.7330.1.S2_at11/112+2620367..2626307PHD-finger family protein, expressed
LOC_Os02g05450Os.7330.1.S1_at10/112+2620367..2626307PHD-finger family protein, expressed
LOC_Os02g05460OsAffx.2515.1.S1_at11/112+2631738..2632109expressed protein
LOC_Os02g05470Os.57511.1.A1_at11/112+2638432..2642084CCT motif family protein, expressed
LOC_Os02g05470Os.25613.1.A1_s_at11/112+2638432..2642084CCT motif family protein, expressed
LOC_Os02g05470Os.25613.1.A1_at6/112+2638432..2642084CCT motif family protein, expressed
LOC_Os02g05470OsAffx.24575.1.S1_x_at1/112+2638432..2642084CCT motif family protein, expressed
LOC_Os02g05480Os.12683.1.S1_at11/112+2642979..2646358Mitogen-activated protein kinase homolog NTF3, putative, expressed
LOC_Os02g05490Os.26369.1.S1_at11/112+2656063..2659126expressed protein
LOC_Os02g05500Os.7288.1.S1_at11/112+2659670..2663041Pyridoxamine 5'-phosphate oxidase family protein, expressed
LOC_Os02g05510Os.6390.1.S1_at11/112+2664440..2668159GATA transcription factor 25, putative, expressed
LOC_Os02g05520Os.50891.1.S1_at10/112+2668554..2671019expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007165biological_processsignal transduction
GO:0007623biological_processcircadian rhythm
GO:0009734biological_processauxin mediated signaling pathway
GO:0004672molecular_functionprotein kinase activity
GO:0004707molecular_functionMAP kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12683.1.S1_at--731--2191Chr02:2643614..2643638 (25 bp)
ACAACCCAAAAGCTCGCAGATATAT
LOC_Os02g05480
Os.12683.1.S1_at--708--1251Chr02:2643597..2643621 (25 bp)
AGATATATCAAATCCCTCCCCTACA
LOC_Os02g05480
Os.12683.1.S1_at--12--4631Chr02:2643555..2643579 (25 bp)
GCGAGTATGTATCCGCATGCACACC
LOC_Os02g05480
Os.12683.1.S1_at--603--1291Chr02:2643506..2643530 (25 bp)
AGATGCTCATATTTGATCCTACCAA
LOC_Os02g05480
Os.12683.1.S1_at--247--5251Chr02:2643479..2643503 (25 bp)
GAATCAGTGTCACCGAGGCTCTTGA
LOC_Os02g05480
Os.12683.1.S1_at--1107--4031Chr02:2643466..2643490 (25 bp)
CGAGGCTCTTGAGCACCCTTACATG
LOC_Os02g05480
Os.12683.1.S1_at--645--4591Chr02:2643408..2643432 (25 bp)
GCGCAAGTGCCTATCGATCTGGACA
LOC_Os02g05480
Os.12683.1.S1_at--500--4371Chr02:2643328..2643352 (25 bp)
CCACTACCACCCTGAAGTTGTTGCA
LOC_Os02g05480
Os.12683.1.S1_at--263--10551Chr02:2643245..2643269 (25 bp)
TTCTTCTTCTAAAAGCCTACGGCGA
LOC_Os02g05480
Os.12683.1.S1_at--694--7051Chr02:2643204..2643228 (25 bp)
GTAACCAAGACGTGCAAGACTTATT
LOC_Os02g05480
Os.12683.1.S1_at--871--8091Chr02:2643124..2643148 (25 bp)
GGACCATTACTTGGTGTATGCATTT
LOC_Os02g05480
Target Sequence 
ACAACCCAAAAGCTCGCAGATATATCAAATCCCTCCCCTACACTCCCGGTGTGCCCCTCGCGAGTATGTATCCGCATGCA
CACCCTCTTGCCATTGATCTTTTACAGAAGATGCTCATATTTGATCCTACCAAAAGAATCAGTGTCACCGAGGCTCTTGA
GCACCCTTACATGTCCCCTCTGTATGATCCAAGTGCAAATCCTCCCGCGCAAGTGCCTATCGATCTGGACATAGACGAGA
ACATCAGTGCAGATATGATCAGGGAAATGATGTGGCACGAGATGCTCCACTACCACCCTGAAGTTGTTGCAGCAATGAGT
GCCCGATGATCTTCAACTGTCCCCAGGAACTTTGCAGGCTCACTTTTTTTTCTTCTTCTAAAAGCCTACGGCGATTATCG
CACCTATTAAGTAACCAAGACGTGCAAGACTTATTTCATGTATATATGAGCGAAATAAGAACGTTGTTGTATCCATATAG
TTCATGTTATGGACCATTACTTGGTGTATGCATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12683.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis