Browse Element(s) Details


Os.12692.1.S1_at

Description gb:AK102194.1
DB_XREF= gi:32987403
TID=Os.12692.1
CNT=270
FEA=FLmRNA
TIER=FL+Stack
STK=49
UG=Os.12692 (NCBI UniGene Cluster)
UG_TITLE=O.sativa mRNA for alpha-tubulin (clone OSTA-111)
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033087C05, full insert sequence.
FL= gb:AK119362.1 gb:AK119638.1 gb:AK119247.1 gb:AK119520.1 gb:AK102194.1 gb:AF030548.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5160011/11Tubulin alpha-1 chain, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g51570OsAffx.3577.1.S1_at11/113+29462895..29465992hypothetical protein
LOC_Os03g51580Os.7441.1.S1_at11/113+29467207..29469644Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g51590OsAffx.25679.1.S1_at11/113+29471317..29472768hypothetical protein
LOC_Os03g51600Os.12692.1.S1_x_at11/113+29476676..29479679Tubulin alpha-1 chain, putative, expressed
LOC_Os03g51600Os.12692.1.S1_at11/113+29476676..29479679Tubulin alpha-1 chain, putative, expressed
LOC_Os03g51600Os.21762.2.S1_x_at2/113+29476676..29479679Tubulin alpha-1 chain, putative, expressed
LOC_Os03g51610Os.15197.1.S2_at11/113+29486534..29493834inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed
LOC_Os03g51610Os.15197.1.S1_at11/113+29486534..29493834inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed
LOC_Os03g51620Os.53363.1.S1_at11/113+29494392..29500681early-responsive to dehydration protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0000226biological_processmicrotubule cytoskeleton organization and biogenesis
GO:0007017biological_processmicrotubule-based process
GO:0005874cellular_componentmicrotubule
GO:0045298cellular_componenttubulin
GO:0005200molecular_functionstructural constituent of cytoskeleton
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12692.1.S1_at--429--971Chr03:29479241..29479265 (25 bp)
AGGAGGTTGGCGCTGAGTCCGACGA
LOC_Os03g51600
Os.12692.1.S1_at--389--8011Chr03:29479242..29479266 (25 bp)
GGAGGTTGGCGCTGAGTCCGACGAG
LOC_Os03g51600
Os.12692.1.S1_at--385--6131Chr03:29479243..29479267 (25 bp)
GAGGTTGGCGCTGAGTCCGACGAGA
LOC_Os03g51600
Os.12692.1.S1_at--595--991Chr03:29479244..29479268 (25 bp)
AGGTTGGCGCTGAGTCCGACGAGAA
LOC_Os03g51600
Os.12692.1.S1_at--340--7911Chr03:29479245..29479269 (25 bp)
GGTTGGCGCTGAGTCCGACGAGAAT
LOC_Os03g51600
Os.12692.1.S1_at--543--3571Chr03:29479451..29479475 (25 bp)
CTTAATGGGCTTACAACCCTCGTTG
LOC_Os03g51600
Os.12692.1.S1_at--200--10431Chr03:29479452..29479476 (25 bp)
TTAATGGGCTTACAACCCTCGTTGT
LOC_Os03g51600
Os.12692.1.S1_at--351--9771Chr03:29479453..29479477 (25 bp)
TAATGGGCTTACAACCCTCGTTGTT
LOC_Os03g51600
Os.12692.1.S1_at--85--2971Chr03:29479454..29479478 (25 bp)
AATGGGCTTACAACCCTCGTTGTTG
LOC_Os03g51600
Os.12692.1.S1_at--224--791Chr03:29479455..29479479 (25 bp)
ATGGGCTTACAACCCTCGTTGTTGT
LOC_Os03g51600
Os.12692.1.S1_at--833--8631Chr03:29479456..29479480 (25 bp)
TGGGCTTACAACCCTCGTTGTTGTA
LOC_Os03g51600
Target Sequence 
AGGAGGTTGGCGCTGAGTCCGACGAGAATGAGGATGGCGATGATGGTGACGAGTACTANGAGGAGTCGTCGTCGTCTGGG
GGCTTGATGTTCTGTGTGTCAAGGCCTGATTGATAACTGCTGCTATCCCATGATCTGCCAGTGTGGAGTTATCCTGTTGC
CGTGTGCGTGTGTCTTCGAGACANTTTGCTTGTGGTGATCTGATGTTTGGGGCTTAATGGGCTTACAACCCTCGTTGTTG
TA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12692.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis