Browse Element(s) Details


Os.12721.1.S1_at

Description gb:AB028887.1
DB_XREF= gi:6015431
GEN=OSEya1
TID=Os.12721.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12721 (NCBI UniGene Cluster)
DEF=Oryza sativa OSEya1 mRNA for OSEYA1, complete cds.
PROD=OSEYA1
FL= gb:AB028887.1 gb:AK068889.1 gb:AK099255.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0202811/11EYA conserved domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g02000Os.52419.1.S1_at11/116+563535..566659Uridylate kinase, putative, expressed
LOC_Os06g02010NANA6+572964..573323hypothetical protein
LOC_Os06g02019Os.10689.1.S1_at11/116+579671..585449Cytochrome P450 88A1, putative, expressed
LOC_Os06g02028OsAffx.4692.1.S1_at11/116+586544..591158EYA conserved domain containing protein, expressed
LOC_Os06g02028Os.12721.1.S1_at11/116+586544..591158EYA conserved domain containing protein, expressed
LOC_Os06g02028OsAffx.4692.1.S1_x_at10/116+586544..591158EYA conserved domain containing protein, expressed
LOC_Os06g02040Os.31022.1.S1_at11/116+592578..593131Late embryogenesis abundant group 1 family protein, expressed
LOC_Os06g02054OsAffx.10373.1.S1_x_at11/116+596333..600697F-box domain containing protein
LOC_Os06g02054OsAffx.28160.1.S1_at11/116+596333..600697F-box domain containing protein
LOC_Os06g02054OsAffx.28160.1.S1_x_at11/116+596333..600697F-box domain containing protein
LOC_Os06g02054OsAffx.10373.1.S1_at11/116+596333..600697F-box domain containing protein
LOC_Os06g02070OsAffx.10371.1.S1_at11/116+605084..606675retrotransposon protein, putative, unclassified
LOC_Os06g02070OsAffx.20604.2.S1_at2/116+605084..606675retrotransposon protein, putative, unclassified
LOC_Os06g02080OsAffx.15226.1.S1_at8/116+612912..613862hypothetical protein
LOC_Os06g02090OsAffx.15227.1.S1_s_at11/116+615415..617865hAT family dimerisation domain containing protein
LOC_Os06g02090OsAffx.15227.2.S1_x_at11/116+615415..617865hAT family dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006470biological_processprotein amino acid dephosphorylation
GO:0030946molecular_functionprotein tyrosine phosphatase activity, metal-dependent
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12721.1.S1_at--474--1871Chr06:590619..590643 (25 bp)
ACGATGGTTAACCAACATCCTGTTG
LOC_Os06g02028
Os.12721.1.S1_at--901--8791Chr06:590639..590663 (25 bp)
TGTTGGTCCTCCTGTTTACCTCAGT
LOC_Os06g02028
Os.12721.1.S1_at--1061--9271Chr06:590666..590690 (25 bp)
TCCGATGCCGGCATTTGCCAATTGC
LOC_Os06g02028
Os.12721.1.S1_at--30--4391Chr06:590682..590706 (25 bp)
GCCAATTGCCGTGGAGACCTTGTTA
LOC_Os06g02028
Os.12721.1.S1_at--786--7611Chr06:590735..590759 (25 bp)
GGGAAGGCATATTGCTGACCCTCTG
LOC_Os06g02028
Os.12721.1.S1_at--875--111Chr06:590791..590815 (25 bp)
ATAAAGCGTCCGACTAGTTCCGGCA
LOC_Os06g02028
Os.12721.1.S1_at--553--10031Chr06:590805..590829 (25 bp)
TAGTTCCGGCATGTGTTTCTAGAAA
LOC_Os06g02028
Os.12721.1.S1_at--760--2811Chr06:590828..590852 (25 bp)
AAGATTCTGTGCTGTTCGTGTTGCC
LOC_Os06g02028
Os.12721.1.S1_at--461--7311Chr06:590836..590860 (25 bp)
GTGCTGTTCGTGTTGCCATTTTACT
LOC_Os06g02028
Os.12721.1.S1_at--37--4391Chr06:590850..590874 (25 bp)
GCCATTTTACTCTGACCAGGCAAAT
LOC_Os06g02028
Os.12721.1.S1_at--86--2271Chr06:590871..590895 (25 bp)
AAATCGTTCGTCTGTTGGTTGTTGT
LOC_Os06g02028
Target Sequence 
ACGATGGTTAACCAACATCCTGTTGGTCCTCCTGTTTACCTCAGTCCTCCGATGCCGGCATTTGCCAATTGCCGTGGAGA
CCTTGTTAAAGGAAATTGTAAGCAGAGAGATGCGATGGGAAGGCATATTGCTGACCCTCTGNCTGGAGAATTAGGAGGCT
GGTGTGTGATAAATAAAGCGTCCGACTAGTTCCGGCATGTGTTTCTAGAAAGATTCTGTGCTGTTCGTGTTGCCATTTTA
CTCTGACCAGGCAAATCGTTCGTCTGTTGGTTGTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12721.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis